Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039746.1-P | Field mustard | cytosol | 97.8 | 97.33 |
| CDY16428 | Canola | cytosol | 97.8 | 97.33 |
| CDY60868 | Canola | cytosol | 97.56 | 97.09 |
| Bra004134.1-P | Field mustard | cytosol | 97.56 | 97.09 |
| CDY07472 | Canola | cytosol | 97.32 | 96.84 |
| CDY39261 | Canola | cytosol | 96.83 | 96.13 |
| Bra038201.1-P | Field mustard | cytosol | 96.34 | 94.27 |
| CDY20354 | Canola | cytosol | 95.85 | 93.79 |
| VIT_04s0079g00530.t01 | Wine grape | cytosol | 89.51 | 89.08 |
| KRH17285 | Soybean | endoplasmic reticulum, mitochondrion | 89.02 | 88.38 |
| KRH72930 | Soybean | endoplasmic reticulum, nucleus | 88.29 | 87.65 |
| PGSC0003DMT400081790 | Potato | cytosol, mitochondrion | 88.29 | 87.23 |
| Solyc01g005560.2.1 | Tomato | extracellular, plastid | 88.29 | 87.23 |
| AT1G54340.1 | Thale cress | peroxisome | 85.37 | 84.13 |
| Solyc11g011930.1.1 | Tomato | plastid, unclear | 84.88 | 82.86 |
| PGSC0003DMT400034694 | Potato | peroxisome | 72.2 | 66.52 |
| AT5G14590.1 | Thale cress | mitochondrion, plastid | 77.56 | 65.57 |
Protein Annotations
| KEGG:00020+1.1.1.42 | KEGG:00480+1.1.1.42 | KEGG:00720+1.1.1.42 | Gene3D:3.40.718.10 | MapMan:50.1.1 | EntrezGene:842905 |
| UniProt:A0A178W7K0 | ProteinID:AAF06054.1 | ProteinID:AEE34442.1 | EMBL:AF419575 | EMBL:AJ437268 | ArrayExpress:AT1G65930 |
| EnsemblPlantsGene:AT1G65930 | RefSeq:AT1G65930 | TAIR:AT1G65930 | RefSeq:AT1G65930-TAIR-G | EnsemblPlants:AT1G65930.1 | TAIR:AT1G65930.1 |
| EMBL:AY045631 | EMBL:AY088129 | EMBL:AY093091 | EMBL:AY097340 | EMBL:BT002400 | GO:GO:0000166 |
| GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004450 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006102 | GO:GO:0006139 |
| GO:GO:0006739 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009987 | GO:GO:0010043 | GO:GO:0016020 | GO:GO:0016491 | GO:GO:0016616 | GO:GO:0042742 |
| GO:GO:0046686 | GO:GO:0046872 | GO:GO:0048046 | GO:GO:0051287 | GO:GO:0055114 | InterPro:IsoCit/isopropylmalate_DH_CS |
| InterPro:IsoPropMal-DH-like_dom | InterPro:Isocitrate_DH_NADP | RefSeq:NP_176768.1 | ProteinID:OAP13032.1 | PFAM:PF00180 | PIRSF:PIRSF000108 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00470 | PANTHER:PTHR11822 | PANTHER:PTHR11822:SF24 | UniProt:Q9SRZ6 |
| SMART:SM01329 | SUPFAM:SSF53659 | TIGRFAMs:TIGR00127 | UniParc:UPI00000AC267 | Symbol:cICDH | SEG:seg |
Description
CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
Coordinates
chr1:+:24538886..24542712
Molecular Weight (calculated)
45748.6 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.321
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.