Factsheet for Bra039746.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65930.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16428	Canola	cytosol	100.0	100.0
Bra004134.1-P	Field mustard	cytosol	99.76	99.76
CDY60868	Canola	cytosol	99.76	99.76
AT1G65930.1	Thale cress	cytosol	97.33	97.8
Bra038201.1-P	Field mustard	cytosol	97.57	95.94
VIT_04s0079g00530.t01	Wine grape	cytosol	88.59	88.59
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	88.59	87.95
Solyc01g005560.2.1	Tomato	extracellular, plastid	88.59	87.95
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	87.86	87.65
KRH72930	Soybean	endoplasmic reticulum, nucleus	87.38	87.17
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	77.91	84.7
Solyc11g011930.1.1	Tomato	plastid, unclear	85.19	83.57
PGSC0003DMT400034694	Potato	peroxisome	72.09	66.74
Bra006262.1-P	Field mustard	mitochondrion, plastid	76.7	65.42

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	EnsemblPlantsGene:Bra039746
EnsemblPlants:Bra039746.1	EnsemblPlants:Bra039746.1-P	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M4FF74	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659
TIGRFAMs:TIGR00127	UniParc:UPI0002545948	SEG:seg	:	:	:

Description

AT1G65930 (E=2e-228) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative

Coordinates

chrA02:+:9714539..9717393

Molecular Weight (calculated)

46009.0 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.333

Length

412 amino acids

Sequence
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFAEASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNS KLLEFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: ADELKTRLGV KA

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.