CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36990_001	Banana	mitochondrion	41.28	87.39
PGSC0003DMT400001262	Potato	cytosol	74.04	86.78
KRG93238	Soybean	cytosol	40.21	81.82
KRH72930	Soybean	endoplasmic reticulum, nucleus	68.94	78.45
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	68.72	78.21
KRH13828	Soybean	nucleus, peroxisome	68.51	77.4
Os04t0508200-01	Rice	plasma membrane, plastid	78.51	77.2
Solyc02g086610.2.1	Tomato	plastid	77.23	77.07
TraesCS2A01G363500.1	Wheat	mitochondrion	77.66	76.68
KRH43614	Soybean	peroxisome	63.62	76.67
HORVU2Hr1G087970.8	Barley	cytosol	64.68	76.57
TraesCS2B01G381500.1	Wheat	mitochondrion	77.23	76.26
VIT_14s0066g00950.t01	Wine grape	mitochondrion	78.72	76.13
TraesCS2D01G361100.1	Wheat	mitochondrion	77.02	76.05
CDX70573	Canola	mitochondrion, plastid	77.45	75.36
EES11093	Sorghum	mitochondrion	78.09	75.36
Bra006262.1-P	Field mustard	mitochondrion, plastid	77.02	74.95
CDX78585	Canola	mitochondrion, plastid	77.23	74.85
AT5G14590.1	Thale cress	mitochondrion, plastid	76.38	74.02
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	76.38	72.97
Zm00001d003083_P002	Maize	mitochondrion	75.11	70.18
GSMUA_Achr5P00030_001	Banana	cytosol	9.36	58.67

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100819151	Gene3D:3.40.718.10	MapMan:50.1.1
EMBL:ACUP02002786	EnsemblPlantsGene:GLYMA_05G005300	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152
GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	UniProt:I1K1I6	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlants:KRH56574	ProteinID:KRH56574	ProteinID:KRH56574.1	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	MetaCyc:PWY-5913	MetaCyc:PWY-6549
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124	MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329
SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000233A88D	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:459545..471122

Molecular Weight (calculated)

53373.1 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.261

Length

470 amino acids

Sequence
(BLAST)

001: MVRVSAVRLS ATMFSSTSLR NPNFLLLPTR FDAPVLRSHT LSFSNRLSLR CYAARAAFDR VPVLNPIVEM DGDEMTRIIW RMIKDKLIFP YLDLNIKYFD
101: LGLQNRDATD DRVTVESAEA TLKYNVAVKC ATITPDETRV KEFGLKSMWR SPNGTIRNIL NGTVFREPII CCNIPRIVSG WKKPICIGRH AFGDQYRATD
201: AIITGPGKLK LVFVPEDGDA PMELDVYNFK GPGVALAMYN VDESIRAFAE SSMSLAFAKK WPLYLSTKNT ILKKYDGRFK DIFQEVYEER WRQKFEEHSI
301: WYEHRLIDDM VAYALKSEGG YVWACKNYDG DVQSDLLAQG FGSLGLMTSV LLSSDGKTLE AEAAHGTVTR HFRFHQKGQE TSTNSIASIF AWTRGLEHRA
401: KLDNNEKLRD FTQNLEAACV ETVESGKMTK DLAILIHGPK VSREFYLNTE EFIDAVAHNL QKKLREPAVV

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.