CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 7
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36990_001	Banana	mitochondrion	39.63	86.94
PGSC0003DMT400001262	Potato	cytosol	70.43	85.54
TraesCS2A01G363500.1	Wheat	mitochondrion	81.52	83.4
TraesCS2B01G381500.1	Wheat	mitochondrion	81.31	83.19
TraesCS2D01G361100.1	Wheat	mitochondrion	81.11	82.98
Os04t0508200-01	Rice	plasma membrane, plastid	81.11	82.64
Zm00001d003083_P002	Maize	mitochondrion	83.78	81.11
HORVU2Hr1G087970.8	Barley	cytosol	65.3	80.1
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	66.12	78.16
KRH56574	Soybean	nucleus	75.36	78.09
Solyc02g086610.2.1	Tomato	plastid	73.92	76.43
OQU78460	Sorghum	cytosol	65.09	76.39
CDX70573	Canola	mitochondrion, plastid	73.51	74.12
Bra006262.1-P	Field mustard	mitochondrion, plastid	73.51	74.12
CDX78585	Canola	mitochondrion, plastid	73.72	74.02
AT5G14590.1	Thale cress	mitochondrion, plastid	72.69	72.99
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	73.51	72.76
VIT_14s0066g00950.t01	Wine grape	mitochondrion	72.48	72.63
KRG93238	Soybean	cytosol	31.83	67.1
GSMUA_Achr5P00030_001	Banana	cytosol	9.45	61.33

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	EntrezGene:8075909
UniProt:C5YBX0	EnsemblPlants:EES11093	ProteinID:EES11093	ProteinID:EES11093.1	GO:GO:0000166	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108
ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7124	MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	EnsemblPlantsGene:SORBI_3006G141600
SUPFAM:SSF53659	unigene:Sbi.5433	TIGRFAMs:TIGR00127	UniParc:UPI0001A86DB8	RefSeq:XP_002446765.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:50373488..50379778

Molecular Weight (calculated)

54414.8 Da

IEP (calculated)

9.001

GRAVY (calculated)

-0.212

Length

487 amino acids

Sequence
(BLAST)

001: MRNLLLPRRL LSAPTMARAS VSGSAAAAKA LLPLNPVRGG RLPSLLPARL PVPGSARVLR GASLRCYAAA AAVAEQSRIK VQNPIVEMDG DEMTRVIWKL
101: IKDKLIFPYL ELDVKYYDLG ILNRDATNDE VTVESAEATL KYNVAVKCAT ITPDETRVKE FKLKSMWRSP NGTIRNILNG TVFREPILCK NIPRILSGWK
201: KPICIGRHAF GDQYRATDMI INGPGKLKMV FVPDGADPME LDVYDFKGPG VALSMYNVDE SIRAFAESSM AMALSKKWPL YLSTKNTILK KYDGRFKDIF
301: QEVYEEQWKE KFEANSIWYE HRLIDDMVAY AVKSDGGYVW ACKNYDGDVQ SDFLAQGFGS LGLMTSVLLS SDGKTLEAEA AHGTVTRHFR LHQKGQETST
401: NSIASIFAWT RGLEHRAKLD KNDSLLDFTH KLESACVETV ESGKMTKDLA LLIHGPKVTR EFYLSTEEFI DAVAQQLRGK IQLPTMV

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.