CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 3
vacuole 1
mitochondrion 2
peroxisome 2
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044021_P001	Maize	extracellular	98.79	98.79
Zm00001d011487_P001	Maize	extracellular	98.54	98.54
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	97.33	97.33
TraesCS3A01G237100.1	Wheat	golgi	91.99	92.67
OQU78460	Sorghum	cytosol	92.48	91.81
TraesCS3B01G265700.1	Wheat	mitochondrion, peroxisome	92.48	84.48
TraesCS3D01G237500.1	Wheat	plastid	92.48	84.48
HORVU3Hr1G059060.2	Barley	mitochondrion	92.48	80.55
EES11093	Sorghum	mitochondrion	78.16	66.12

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	UniProt:A0A1W0VYP8
GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488
GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlants:OQU87253	ProteinID:OQU87253	ProteinID:OQU87253.1	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124	MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329
EnsemblPlantsGene:SORBI_3003G241500	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0002207261	:	:

Description

hypothetical protein

Coordinates

chr3:-:58067233..58071053

Molecular Weight (calculated)

46073.1 Da

IEP (calculated)

6.851

GRAVY (calculated)

-0.228

Length

412 amino acids

Sequence
(BLAST)

001: MAFEKIKVSN PIVEMDGDEM TRVFWQSIKD KLIFPFLDLD IKYYDLGILH RDATDDKVTV EAAEATLKYN VAIKCATITP DETRVKEFNL KHMWKSPNGT
101: IRNIINGTVF REPIICKNVP RLVPGWTKPI CIGRHAFGDQ YRATDAVLKG PGKLKLVFEG KEEQIDLEVF NFTGAGGVAL SMYNTDESIR AFAEASMTTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAGWKSKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFALKLE AACVGTVESG KMTKDLALLV HGSASVTRSH YLNTEEFIDA
401: VATELRSRLG AN

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.