Factsheet for HORVU3Hr1G059060.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 6
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G237100.1	Wheat	golgi	85.41	98.78
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	81.4	93.45
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	80.55	92.48
Zm00001d044021_P001	Maize	extracellular	80.34	92.23
TraesCS3B01G265700.1	Wheat	mitochondrion, peroxisome	87.53	91.8
TraesCS3D01G237500.1	Wheat	plastid	87.53	91.8
Zm00001d011487_P001	Maize	extracellular	79.7	91.5
HORVU3Hr1G033920.10	Barley	peroxisome	71.46	81.45
HORVU2Hr1G087970.8	Barley	cytosol	58.14	69.27

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:HORVU3Hr1G059060	EnsemblPlants:HORVU3Hr1G059060.2
InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M0YIA7	PFAM:PF00180	PIRSF:PIRSF000108
ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127
UniParc:UPI000294C7C1	SEG:seg	:	:	:	:

Description

Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:M0YIA7]

Coordinates

chrchr3H:-:446058348..446062780

Molecular Weight (calculated)

52333.8 Da

IEP (calculated)

7.763

GRAVY (calculated)

-0.182

Length

473 amino acids

Sequence
(BLAST)

001: MFFLKYTYRK RALLAPSGLV FKCAGKAAHS VLSPLRATTA AASPPTCPSP LPTSEAGSAS AATAMAFEKI KVANPIVEMD GDEMTRVFWQ SIKDKLIFPF
101: LDLDIKYFDL GVLHRDATDD KVTVEAAEAT LKYNVAIKCA TITPDEDRVK EFNLKQMWRS PNGTIRNIIN GTVFREPIIC KNVPKLVPGW TKPICIGRHA
201: FGDQYRATDA VLKGPGKLRL VFEGKDETVD LEVFNFTGAG GVAMAMYNTD ESIRGFAEAS LAIAYEKKWP LYLSTKNTIL KKYDGRFKDI FQEIYEAGWK
301: SKYEAAGIWY EHRLIDDMVA YALKSEGGYV WACKNYDGDV QSDFLAQGFG SLGLMTSVLM CPDGKTIEAE AAHGTVTRHF RVHQKGGETS TNSIASIFAW
401: TRGLAHRAKL DDNARLLEFA QKLEEACVGT VESGKMTKDL ALLVHGSSKV TRSDYLNTEE FIDAVAAELK SRL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.