Factsheet for GSMUA_Achr2P23210_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36990_001	Banana	mitochondrion	44.31	98.2
PGSC0003DMT400001262	Potato	cytosol	68.9	84.54
GSMUA_Achr4P00910_001	Banana	cytosol	65.04	78.05
GSMUA_Achr1P05110_001	Banana	cytosol	64.43	77.32
GSMUA_Achr7P14090_001	Banana	peroxisome	64.63	76.81
Os04t0508200-01	Rice	plasma membrane, plastid	74.59	76.78
KRH56574	Soybean	nucleus	72.97	76.38
HORVU2Hr1G087970.8	Barley	cytosol	61.18	75.82
Solyc02g086610.2.1	Tomato	plastid	72.36	75.58
TraesCS2A01G363500.1	Wheat	mitochondrion	72.76	75.21
TraesCS2B01G381500.1	Wheat	mitochondrion	72.56	75.0
TraesCS2D01G361100.1	Wheat	mitochondrion	72.15	74.58
CDX78585	Canola	mitochondrion, plastid	72.56	73.61
EES11093	Sorghum	mitochondrion	72.76	73.51
CDX70573	Canola	mitochondrion, plastid	71.95	73.29
Bra006262.1-P	Field mustard	mitochondrion, plastid	71.54	72.88
VIT_14s0066g00950.t01	Wine grape	mitochondrion	71.95	72.84
AT5G14590.1	Thale cress	mitochondrion, plastid	70.94	71.96
Zm00001d003083_P002	Maize	mitochondrion	70.94	69.38
KRG93238	Soybean	cytosol	32.52	69.26
GSMUA_Achr5P00030_001	Banana	cytosol	9.35	61.33

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G23210_001	EnsemblPlants:GSMUA_Achr2P23210_001
EnsemblPlants:GSMUA_Achr2T23210_001	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M0SAG2	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	SMART:SM01329	SUPFAM:SSF53659
TIGRFAMs:TIGR00127	UniParc:UPI000295F3D2	SEG:seg	:	:	:

Description

Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G23210_001]

Coordinates

chr2:+:22018144..22028264

Molecular Weight (calculated)

55578.9 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.260

Length

492 amino acids

Sequence
(BLAST)

001: MNNGSAGHFA RQIACFVMRR LLSTGAMSSS SPYSSFLPGK NPSSIRLTHQ RRLNGVRFSF PTRFVVVGSS VRCLASFSPA ERIKVHNPIV EMDGDEMTRV
101: IWRMIKEKLI FPFLELDIKY FDLGLLNRDA TDDRVTVESA EATLKHNVAV KCATITPDEA RVKEFKLKSM WRSPNGTIRN ILNGTVFREP ILCCNVPRIV
201: AGWKKPICIG RHAFGDQYRA TDMIVKGPGK LKMVFVPADK GPPVEQDVYE FKGSGIALSM YNVDESIRAF AESSMSMAFA KKWPLYLSTK NTILKKYDGR
301: FKDIFQEVYE EKWKSKFEEQ SIWYEHRLID DMVAYALKSS GGYVWACKNY DGDVQSDFLA QGFGSLGLMT SVLLSSDGKT LEAEAAHGTV TRHFRLHQRG
401: QETSTNSIAS IFAWTRGLEH RAELDKHEKL QDFVQKLESA CIETVESGKM TKDLALLIHG PRVSREFYLN TEEFVDAVAQ NLKEKIQVAA VI

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.