Factsheet for GSMUA_Achr1P05110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P00910_001	Banana	cytosol	96.59	96.59
GSMUA_Achr7P14090_001	Banana	peroxisome	88.78	87.92
VIT_19s0085g01150.t01	Wine grape	peroxisome	87.07	85.82
KRH43614	Soybean	peroxisome	80.49	84.62
KRH13828	Soybean	nucleus, peroxisome	85.37	84.13
AT1G54340.1	Thale cress	peroxisome	84.63	83.41
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	76.83	83.11
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	84.39	81.22
GSMUA_Achr6P36990_001	Banana	mitochondrion	42.44	78.38
CDY46358	Canola	peroxisome	69.02	75.47
CDX98289	Canola	peroxisome	44.88	69.7
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	77.32	64.43
GSMUA_Achr5P00030_001	Banana	cytosol	9.51	52.0

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G05110_001	EnsemblPlants:GSMUA_Achr1P05110_001
EnsemblPlants:GSMUA_Achr1T05110_001	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M0RX69	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659
TIGRFAMs:TIGR00127	UniParc:UPI000296FB3D	:	:	:	:

Description

Isocitrate dehydrogenase [NADP] [Source:GMGC_GENE;Acc:GSMUA_Achr1G05110_001]

Coordinates

chr1:+:4224098..4229925

Molecular Weight (calculated)

45846.7 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.268

Length

410 amino acids

Sequence
(BLAST)

001: MAFEKIKVAN PVVEMDGDEM TRVFWKSIKE KLIFPFVDLD IKYFDLGLPN RDATDDKVTI ESAEATLKYN VAIKCATITP DEARVKEFNL KSMWKSPNGT
101: IRNIVNGTVF REPIICKNVP RLVPGWTKPI CIGRHAFGDQ YRATDTVIKG PGKLKLVFEG KDEEVALEVF NFTGAGGVAL SMYNTDESIR PFADASMATA
201: YQKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAEWKSKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWSRGL AHRGKLDDNT RLVDFTQKLE EACVGTVESG KMTKDLALLI HGSSVTRAQY LNTEEFIDAV
401: ASELRARLSA

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.