Factsheet for GSMUA_Achr6P36990_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001262	Potato	cytosol	87.84	48.63
HORVU2Hr1G087970.8	Barley	cytosol	86.94	48.61
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	98.2	44.31
GSMUA_Achr4P00910_001	Banana	cytosol	79.28	42.93
GSMUA_Achr1P05110_001	Banana	cytosol	78.38	42.44
GSMUA_Achr7P14090_001	Banana	peroxisome	78.83	42.27
KRH56574	Soybean	nucleus	87.39	41.28
Solyc02g086610.2.1	Tomato	plastid	87.39	41.19
Os04t0508200-01	Rice	plasma membrane, plastid	88.29	41.0
TraesCS2A01G363500.1	Wheat	mitochondrion	86.94	40.55
TraesCS2B01G381500.1	Wheat	mitochondrion	86.49	40.34
VIT_14s0066g00950.t01	Wine grape	mitochondrion	88.29	40.33
TraesCS2D01G361100.1	Wheat	mitochondrion	86.04	40.13
EES11093	Sorghum	mitochondrion	86.94	39.63
CDX78585	Canola	mitochondrion, plastid	85.59	39.18
Bra006262.1-P	Field mustard	mitochondrion, plastid	85.14	39.13
CDX70573	Canola	mitochondrion, plastid	85.14	39.13
AT5G14590.1	Thale cress	mitochondrion, plastid	84.68	38.76
Zm00001d003083_P002	Maize	mitochondrion	82.43	36.38
GSMUA_Achr5P00030_001	Banana	cytosol	9.91	29.33
KRG93238	Soybean	cytosol	21.62	20.78

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr6G36990_001	EnsemblPlants:GSMUA_Achr6P36990_001	EnsemblPlants:GSMUA_Achr6T36990_001	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP
UniProt:M0TDD9	PFAM:PF00180	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	SMART:SM01329
SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000296222E	SEG:seg	:	:

Description

Isocitrate dehydrogenase [NADP] [Source:GMGC_GENE;Acc:GSMUA_Achr6G36990_001]

Coordinates

chr6:+:34889868..34896040

Molecular Weight (calculated)

24929.9 Da

IEP (calculated)

7.927

GRAVY (calculated)

-0.246

Length

222 amino acids

Sequence
(BLAST)

001: MWRSPNGTIR NILNGTVFRE PILCRNVPRI VAGWKKPTCI GRHAFGDQYC ATDMIVKGPG KLKMVFVPAD KGPPVEQDVY EFKGSGIALS MYNVDESILA
101: FAESSMSMAF AKKWPLYLST KNTILKKYDG RFKDIFQEVY EEKWKSKFEE QSIWYEHRLI DDMVAYALKS SGGYVWACKN YDGDVQSDFL AQGFGSLGLM
201: TSVLLSSDGK TLEAEAAHGT VT

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.