Factsheet for Os01t0248400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
plastid 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	92.03	92.03
HORVU3Hr1G033920.10	Barley	peroxisome	92.03	91.81
TraesCS3B01G199500.1	Wheat	peroxisome	91.79	91.79
TraesCS3D01G175100.1	Wheat	peroxisome	91.79	91.79
GSMUA_Achr7P14090_001	Banana	peroxisome	87.44	87.44
KRH43614	Soybean	peroxisome	80.68	85.64
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	84.78	85.19
Os05t0573200-00	Rice	cytoskeleton, cytosol, peroxisome	84.78	85.19
KRH13828	Soybean	nucleus, peroxisome	85.02	84.62
VIT_19s0085g01150.t01	Wine grape	peroxisome	83.33	82.93
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	74.15	81.0
AT1G54340.1	Thale cress	peroxisome	80.68	80.29
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	81.4	79.11
CDY46358	Canola	peroxisome	67.15	74.13
CDX98289	Canola	peroxisome	42.75	67.05
Os04t0508200-01	Rice	plasma membrane, plastid	76.09	65.9

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	EntrezGene:4327213	MapMan:50.1.1
ProteinID:AAD38292.1	EMBL:AK072762	ProteinID:BAD81495.1	ProteinID:BAF04497.1	ProteinID:BAS71328.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom
InterPro:Isocitrate_DH_NADP	EnsemblPlantsGene:Os01g0248400	EnsemblPlants:Os01t0248400-01	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF22	UniProt:Q9XHX4	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127
UniParc:UPI00000A34A2	RefSeq:XP_015614157.1	:	:	:	:

Description

Similar to Isocitrate dehydrogenase (Fragment). (Os01t0248400-01)

Coordinates

chr1:+:8170309..8175903

Molecular Weight (calculated)

46572.8 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.250

Length

414 amino acids

Sequence
(BLAST)

001: MAFEKIVVAN PVVEMDGDEM TRVIWKWIKD KLIFPFLDLD IKYYDLGLPN RDATGDKVTI ESAEATLKYN VAIKCATITP DEGRVKEFNL SAMWKSPNGT
101: IRNILNGTVF REPIICKNIP RLVPGWIKPI CIGRHAFGDQ YRATDTVIKG PGKLKLVFDG REEQIELDVF NFTGAGGVAL SMYNTDESIW AFAEASMNMA
201: YQKRWPLYLS TKNTILKKYD GRFKDIFQEN YETKWRAKFD DAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDL IAQGFGSLGL MTSVLVCPDG
301: RTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTTGL GHRAKLDDNK RLLDFVQKLE AACVGTVESG KMTKDLALLV HGPNVSRDKY LNTVEFIDAV
401: AEDLRTRLSV TSKL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.