CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82370	Canola	cytosol	83.97	100.0
Bra001661.1-P	Field mustard	cytosol	82.91	98.73
CDY63017	Canola	cytosol	82.69	98.47
CDY48693	Canola	cytosol	81.62	97.2
AT3G17390.1	Thale cress	cytosol	81.62	97.2
CDY22010	Canola	cytosol	71.79	92.05
CDY72092	Canola	cytosol	71.79	92.05
CDX74394	Canola	cytosol	71.58	91.78
CDX80079	Canola	cytosol	76.5	91.56
GSMUA_Achr3P12780_001	Banana	cytosol	76.71	91.12
CDY37784	Canola	cytosol	76.07	91.05
CDY46742	Canola	cytosol	72.86	90.93
CDX75007	Canola	cytosol	72.44	90.88
CDY33203	Canola	cytosol	72.44	90.88
Os05t0135700-01	Rice	cytosol	76.5	90.4
EES17665	Sorghum	cytosol	76.5	90.4
CDX79695	Canola	cytosol	72.44	90.4
HORVU6Hr1G034650.1	Barley	plasma membrane	76.28	90.15
GSMUA_Achr1P15960_001	Banana	cytosol	75.85	90.1
GSMUA_Achr8P06200_001	Banana	cytosol	75.43	89.82
TraesCS6B01G197300.1	Wheat	cytosol	75.85	89.65
TraesCS6A01G169300.1	Wheat	cytosol	75.85	89.65
TraesCS6D01G159100.1	Wheat	plastid	75.85	89.65
Os01t0293000-01	Rice	cytosol	75.64	89.39
EES02825	Sorghum	cytosol	75.64	89.39
GSMUA_Achr1P18400_001	Banana	cytosol	27.35	87.07
CDX91837	Canola	cytosol	65.6	84.34

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	GO:A0A078CIL5	InterPro:ADOMET_SYNTHASE_CS	EnsemblPlants:CDX75914
ProteinID:CDX75914	ProteinID:CDX75914.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478
GO:GO:0005488	GO:GO:0005524	GO:GO:0006556	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00123928001	HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772
PFAM:PF02773	ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF35	MetaCyc:PWY-5041
MetaCyc:PWY-5912	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam
SUPFAM:SSF55973	TIGRFAMs:TIGR01034	UniPathway:UPA00315	UniParc:UPI0004EE6D34	SEG:seg	:

Description

BnaC03g39970D

Coordinates

chrLK031805:-:1804117..1805732

Molecular Weight (calculated)

51512.5 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.300

Length

468 amino acids

Sequence
(BLAST)

001: MLPLVVLARG GPVKQIQRLN IEYTNENGNE SRRNYNLTPP HWLVYINLLC SSFSFVLPPP HLSNGIRYYQ PSDRKMESFL FTSESVNEGH PDKLCDQISD
101: AILDACLEQD PESKVACETC TKTNMVMVFG EITTKANVDY EKIVRKTCRE IGFISDDVGL DADNCKVLVN IEQQSPDIAQ GVHGHLTKKP EDIGAGDQGH
201: MFGYATDETP ELMPLSHVLA TKLGAKLTEV RKNGTCAWLR PDGKTQVTVE YLNENGAMVP VRVHTVLIST QHDETVTNDE IAADLKEHVI KPVIPEKYLD
301: EKTIFHLNPS GRFVIGGPHG DAGLTGRKII IDTYGGWGAH GGGAFSGKDP TKVDRSGAYI VRQAAKSIVA SGLARRCIVQ VSYAIGVPEP LSVFVDSYGT
401: GKIPDKEILE IVKESFDFRP GMISINLDLK RGGNGRFLKT AAYGHFGRDD ADFTWEVVKP LKSNKVQA

Best Arabidopsis Sequence Match ( AT3G17390.1 )
(BLAST)

001: MESFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ANVDYEQIVR KTCREIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEVGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNGT CPWLRPDGKT QVTIEYINES GAMVPVRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RVIVQVSYAI GVPEPLSVFV DSYGTGKIPD KEILEIVKES FDFRPGMISI NLDLKRGGNG RFLKTAAYGH FGRDDADFTW EVVKPLKSNK VQA

Arabidopsis Description

METK4S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VIP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.