Factsheet for HORVU6Hr1G034650.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
vacuole 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G169300.1	Wheat	cytosol	98.99	98.99
TraesCS6B01G197300.1	Wheat	cytosol	98.99	98.99
TraesCS6D01G159100.1	Wheat	plastid	98.99	98.99
EES02825	Sorghum	cytosol	95.96	95.96
Os01t0293000-01	Rice	cytosol	94.44	94.44
KRH02439	Soybean	nucleus	91.67	92.6
KRH50640	Soybean	endoplasmic reticulum	91.67	92.6
KRH12731	Soybean	endoplasmic reticulum	91.92	92.15
KRH68318	Soybean	endoplasmic reticulum	91.67	92.13
GSMUA_Achr3P12780_001	Banana	cytosol	91.67	92.13
GSMUA_Achr8P06200_001	Banana	cytosol	91.41	92.11
KRH02438	Soybean	endoplasmic reticulum, nucleus	91.16	92.09
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	91.41	91.88
PGSC0003DMT400047146	Potato	cytosol	90.91	91.6
GSMUA_Achr1P15960_001	Banana	cytosol	90.91	91.37
PGSC0003DMT400011943	Potato	cytosol	90.66	91.35
CDY63017	Canola	cytosol	90.4	91.09
AT1G02500.1	Thale cress	cytosol	90.4	91.09
Bra021241.1-P	Field mustard	cytosol	90.4	91.09
CDX82370	Canola	cytosol	90.15	90.84
CDY22010	Canola	cytosol	83.59	90.68
CDY72092	Canola	cytosol	83.59	90.68
Bra036311.1-P	Field mustard	cytosol	83.33	90.41
CDX74394	Canola	cytosol	83.33	90.41
Bra041036.1-P	Field mustard	cytosol	89.14	90.28
CDX80079	Canola	cytosol	89.14	90.28
AT3G17390.1	Thale cress	cytosol	89.39	90.08
Bra000914.1-P	Field mustard	cytosol	89.39	90.08
Bra001661.1-P	Field mustard	cytosol	89.39	90.08
CDY48693	Canola	cytosol	89.14	89.82
AT4G01850.1	Thale cress	cytosol	89.14	89.82
CDY37784	Canola	cytosol	88.64	89.77
KRH33763	Soybean	endoplasmic reticulum	88.13	89.72
HORVU6Hr1G063560.1	Barley	cytosol	89.14	89.59
HORVU6Hr1G063570.1	Barley	cytosol	89.14	89.59
HORVU6Hr1G063540.1	Barley	plasma membrane	89.14	89.59
VIT_14s0060g00480.t01	Wine grape	cytosol	89.9	89.22
PGSC0003DMT400072701	Potato	cytosol	87.63	88.97
PGSC0003DMT400087679	Potato	cytosol	87.37	88.72
GSMUA_Achr1P18400_001	Banana	cytosol	32.83	88.44
AT2G36880.1	Thale cress	cytosol	86.36	87.69
KRH19887	Soybean	endoplasmic reticulum	86.11	87.44
Bra023084.1-P	Field mustard	cytosol	86.11	87.44
CDY46742	Canola	cytosol	82.58	87.2
CDX79695	Canola	cytosol	82.58	87.2
VIT_05s0020g00670.t01	Wine grape	cytosol	92.68	87.17
CDY33203	Canola	cytosol	82.07	87.13
CDX75007	Canola	cytosol	82.07	87.13
VIT_07s0005g02230.t01	Wine grape	cytosol	91.67	87.05
VIT_06s0061g00500.t01	Wine grape	cytosol	85.86	86.96
KRH32501	Soybean	cytosol	85.61	86.92
Bra017219.1-P	Field mustard	cytosol	85.35	86.67
Bra005236.1-P	Field mustard	cytosol	81.57	86.6
KRH67734	Soybean	endoplasmic reticulum	85.1	86.41
CDX91837	Canola	cytosol	76.52	83.24
HORVU6Hr1G063490.2	Barley	cytosol	88.64	79.59
KRH69160	Soybean	cytosol	41.16	77.99
CDX75914	Canola	cytosol, mitochondrion	90.15	76.28
Solyc04g049200.1.1	Tomato	cytosol	17.93	73.96
VIT_08s0007g05000.t01	Wine grape	cytosol	77.53	68.99
KRG96026	Soybean	cytosol	11.62	68.66
VIT_03s0017g00080.t01	Wine grape	cytosol	9.85	52.7

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006556	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G034650	EnsemblPlants:HORVU6Hr1G034650.1
UniProt:M0ZAM5	HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497
ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF16	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N
InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034	UniParc:UPI000295EECE
SEG:seg	:	:	:	:	:

Description

S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:M0ZAM5]

Coordinates

chrchr6H:-:163195873..163197063

Molecular Weight (calculated)

43160.2 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.253

Length

396 amino acids

Sequence
(BLAST)

001: MAEVETFLFT SESVNEGHPD KLCDQISDAV LDACLAEDPD SKVACETCTK TNMVMVFGEI TTKANVDYEK IVRDTCRGIG FVSNDVGLDA DHCKVLVNIE
101: QQSPDIAQGV HGHFTKRPEE IGAGDQGHMF GYATDETPEF MPLSHVLATK LGACLTEVRK NATCPWLRPD GKTQVTVEYH NDNGAMVPIR VHTVLISTQH
201: DETVTNDEIA ADLKEHVIKP VIPEQYLDEN TIFHLNPSGR FVIGGPHGDA GLTGRKIIID TYGGWGAHGG GAFSGKDPTK VDRSGAYIAR QAAKSIVASG
301: IARRCIVQVS YAIGVPEPLS VFVDTYGTGK IPDKEILEIV KENFDFRPGM IIINLDLKRG GSGRYLKTAA YGHFGRDGAD FTWEVVKPLK WEKPSA

Best Arabidopsis Sequence Match ( AT4G01850.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM2S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V3V9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.