Factsheet for PGSC0003DMT400047146

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g101060.2.1	Tomato	extracellular, nucleus, plastid	98.22	98.22
PGSC0003DMT400011943	Potato	cytosol	95.17	95.17
VIT_14s0060g00480.t01	Wine grape	cytosol	93.64	92.23
GSMUA_Achr3P12780_001	Banana	cytosol	92.11	91.88
KRH33763	Soybean	endoplasmic reticulum	90.84	91.77
GSMUA_Achr8P06200_001	Banana	cytosol	91.6	91.6
EES02825	Sorghum	cytosol	92.11	91.41
GSMUA_Achr1P15960_001	Banana	cytosol	91.6	91.37
HORVU6Hr1G034650.1	Barley	plasma membrane	91.6	90.91
TraesCS6D01G159100.1	Wheat	plastid	91.6	90.91
Os05t0135700-01	Rice	cytosol	91.6	90.91
TraesCS6B01G197300.1	Wheat	cytosol	91.6	90.91
TraesCS6A01G169300.1	Wheat	cytosol	91.6	90.91
EES17665	Sorghum	cytosol	91.35	90.66
Os01t0293000-01	Rice	cytosol	91.35	90.66
PGSC0003DMT400087679	Potato	cytosol	89.57	90.26
PGSC0003DMT400072701	Potato	cytosol	88.8	89.49
GSMUA_Achr1P18400_001	Banana	cytosol	32.32	86.39
Zm00001d008175_P001	Maize	cytosol	11.96	55.95

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:102588511	Gene3D:3.30.300.10	MapMan:7.3.1	ProteinID:ABB29941	ProteinID:ABB29941.1
ProteinID:ABB29942	ProteinID:ABB29942.1	InterPro:ADOMET_SYNTHASE_CS	EMBL:DQ235184	EMBL:DQ235185	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006556	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	HAMAP:MF_00086
RefSeq:NP_001275609.1	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	EnsemblPlantsGene:PGSC0003DMG400018292	PGSC:PGSC0003DMG400018292
EnsemblPlants:PGSC0003DMT400047146	PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF16
UniProt:Q307Y9	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam
SUPFAM:SSF55973	TIGRFAMs:TIGR01034	UniParc:UPI00005DB2C1	SEG:seg	:	:

Description

METK1S-adenosylmethionine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q307Y9]

Coordinates

chr1:+:78724855..78727233

Molecular Weight (calculated)

43218.5 Da

IEP (calculated)

5.608

GRAVY (calculated)

-0.322

Length

393 amino acids

Sequence
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPESKV ACETCTKTNL VMVFGEITTK AIVDYEKIVR DTCRNIGFVS DDVGLDADNC KVLVYIEQQS
101: PDIAQGVHGH LTKRPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CPWLRPDGKT QVTVEYCNDN GAMIPIKVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYGTGKIPD KEILKIVKEN FDFRPGMMSI NLDLKRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWEK PQD

Best Arabidopsis Sequence Match ( AT4G01850.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM2S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V3V9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.