Factsheet for PGSC0003DMT400087679

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008280.1.1	Tomato	nucleus	98.46	98.46
PGSC0003DMT400072701	Potato	cytosol	96.92	96.92
Bra023084.1-P	Field mustard	cytosol	94.87	94.87
CDY46742	Canola	cytosol	91.03	94.67
CDX75007	Canola	cytosol	90.51	94.64
CDY33203	Canola	cytosol	90.51	94.64
AT2G36880.1	Thale cress	cytosol	94.62	94.62
Bra005236.1-P	Field mustard	cytosol	90.26	94.37
CDX79695	Canola	cytosol	90.51	94.13
KRH19887	Soybean	endoplasmic reticulum	94.1	94.1
Bra017219.1-P	Field mustard	cytosol	93.85	93.85
KRH32501	Soybean	cytosol	93.33	93.33
VIT_06s0061g00500.t01	Wine grape	cytosol	93.33	93.09
KRH67734	Soybean	endoplasmic reticulum	92.31	92.31
PGSC0003DMT400011943	Potato	cytosol	90.26	89.57
PGSC0003DMT400047146	Potato	cytosol	90.26	89.57
EES17665	Sorghum	cytosol	88.97	87.63
HORVU6Hr1G034650.1	Barley	plasma membrane	88.72	87.37
Os05t0135700-01	Rice	cytosol	88.21	86.87
TraesCS6A01G169300.1	Wheat	cytosol	88.21	86.87
TraesCS6B01G197300.1	Wheat	cytosol	88.21	86.87
TraesCS6D01G159100.1	Wheat	plastid	88.21	86.87
EES02825	Sorghum	cytosol	88.21	86.87
GSMUA_Achr3P12780_001	Banana	cytosol	87.69	86.8
GSMUA_Achr8P06200_001	Banana	cytosol	87.44	86.77
GSMUA_Achr1P15960_001	Banana	cytosol	87.18	86.29
Os01t0293000-01	Rice	cytosol	87.44	86.11
GSMUA_Achr1P18400_001	Banana	cytosol	29.74	78.91
VIT_08s0007g05000.t01	Wine grape	cytosol	84.36	73.93

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:102578902	Gene3D:3.30.300.10	MapMan:7.3.1	ProteinID:AAL37899	ProteinID:AAL37899.1
ProteinID:ABB02634	ProteinID:ABB02634.1	InterPro:ADOMET_SYNTHASE_CS	EMBL:AF443869	EMBL:DQ222503	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006556	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	UniProt:M1DEB7
HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	EnsemblPlantsGene:PGSC0003DMG400037250	PGSC:PGSC0003DMG400037250
EnsemblPlants:PGSC0003DMT400087679	PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF36
InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973
TIGRFAMs:TIGR01034	UniParc:UPI00029640CE	RefSeq:XP_006354373.1	RefSeq:XP_006354374.1	SEG:seg	:

Description

S-adenosylmethionine synthase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400037250]

Coordinates

chr9:-:5041031..5042203

Molecular Weight (calculated)

42723.9 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.286

Length

390 amino acids

Sequence
(BLAST)

001: METFLFTSES VNEGHPDKLC DQVSDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ANVDYEKIVR DTCREIGFIS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDN GAMVPIRVHT VLISTQHDET
201: VTNDQIAQDL KEHVIKPVIP AQYLDENTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVASGLAR
301: RCIVQVSYAI GVAEPLSVFV DTYKTGTIPD KDILVLIKEN FDFRPGMMSI NLDLLRGGNF RYQKTAAYGH FGRDDPDFTW ETVKVLKPKA

Best Arabidopsis Sequence Match ( AT2G36880.2 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTA AKVDYEKIVR STCREIGFIS ADVGLDADKC NVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDG GAMIPIRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP AKYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYKTGTIPD KDILVLIKEA FDFRPGMMAI NLDLKRGGNF RFQKTAAYGH FGRDDPDFTW EVVKPLKPKA

Arabidopsis Description

METK3S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VXF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.