CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32501	Soybean	cytosol	98.72	98.72
Solyc09g008280.1.1	Tomato	nucleus	94.62	94.62
PGSC0003DMT400072701	Potato	cytosol	94.62	94.62
PGSC0003DMT400087679	Potato	cytosol	94.1	94.1
KRH67734	Soybean	endoplasmic reticulum	94.1	94.1
Solyc10g083970.1.1	Tomato	nucleus, unclear	93.85	93.85
Bra017219.1-P	Field mustard	cytosol	93.08	93.08
AT2G36880.1	Thale cress	cytosol	93.08	93.08
Bra005236.1-P	Field mustard	cytosol	88.97	93.03
CDX75007	Canola	cytosol	88.97	93.03
CDY33203	Canola	cytosol	88.97	93.03
Bra023084.1-P	Field mustard	cytosol	92.82	92.82
CDX79695	Canola	cytosol	88.97	92.53
CDY46742	Canola	cytosol	88.97	92.53
KRH02439	Soybean	nucleus	88.97	88.52
KRH02438	Soybean	endoplasmic reticulum, nucleus	88.72	88.27
KRH12731	Soybean	endoplasmic reticulum	89.23	88.1
KRH50640	Soybean	endoplasmic reticulum	87.95	87.5
KRH33763	Soybean	endoplasmic reticulum	86.41	86.63
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	87.44	86.55
EES17665	Sorghum	cytosol	87.69	86.36
KRH68318	Soybean	endoplasmic reticulum	87.18	86.29
HORVU6Hr1G034650.1	Barley	plasma membrane	87.44	86.11
EES02825	Sorghum	cytosol	87.18	85.86
TraesCS6D01G159100.1	Wheat	plastid	86.92	85.61
TraesCS6B01G197300.1	Wheat	cytosol	86.92	85.61
TraesCS6A01G169300.1	Wheat	cytosol	86.92	85.61
Os05t0135700-01	Rice	cytosol	86.92	85.61
Os01t0293000-01	Rice	cytosol	86.92	85.61
GSMUA_Achr3P12780_001	Banana	cytosol	86.41	85.53
GSMUA_Achr8P06200_001	Banana	cytosol	86.15	85.5
GSMUA_Achr1P15960_001	Banana	cytosol	86.15	85.28
KRG96026	Soybean	cytosol	14.62	85.07
GSMUA_Achr1P18400_001	Banana	cytosol	28.97	76.87
VIT_08s0007g05000.t01	Wine grape	cytosol	85.13	74.61
KRH69160	Soybean	cytosol	38.97	72.73

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:100805448	Gene3D:3.30.300.10	MapMan:7.3.1	EMBL:ACUP02008212	InterPro:ADOMET_SYNTHASE_CS
EnsemblPlantsGene:GLYMA_13G141600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006556	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	UniProt:I1LZ62	EnsemblPlants:KRH19887	ProteinID:KRH19887	ProteinID:KRH19887.1
HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376
ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF15	MetaCyc:PWY-5041	MetaCyc:PWY-5912	InterPro:S-AdoMet_synt_C
InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034
UniParc:UPI000233CD7B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:25413333..25416471

Molecular Weight (calculated)

42588.8 Da

IEP (calculated)

6.191

GRAVY (calculated)

-0.276

Length

390 amino acids

Sequence
(BLAST)

001: METFLFTSES VNEGHPDKIC DQVSDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK AKVNYEKIVR DTCRGIGFVS ADVGLDADKC NVLVNIEQQS
101: PDIAQGVHGH LTKKPEEIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYRNDG GAMVPIRVHT VLISTQHDET
201: VTNDQIAKDL KEHVIKPVIP AEYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVASGLAR
301: RCIVQVSYAI GVPDPLSVFV DTYKTGKIPD SDILALIKEH FDFRPGMISI NLDLMRGGNF RYQKTAAYGH FGRDDPDFTW ETVKILKPSA

Best Arabidopsis Sequence Match ( AT2G36880.2 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTA AKVDYEKIVR STCREIGFIS ADVGLDADKC NVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDG GAMIPIRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP AKYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYKTGTIPD KDILVLIKEA FDFRPGMMAI NLDLKRGGNF RFQKTAAYGH FGRDDPDFTW EVVKPLKPKA

Arabidopsis Description

METK3S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VXF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.