CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	99.75	99.75
KRH12731	Soybean	endoplasmic reticulum	94.16	93.92
KRH50640	Soybean	endoplasmic reticulum	93.15	93.62
KRH02438	Soybean	endoplasmic reticulum, nucleus	92.39	92.86
KRH02439	Soybean	nucleus	92.39	92.86
GSMUA_Achr3P12780_001	Banana	cytosol	92.13	92.13
HORVU6Hr1G034650.1	Barley	plasma membrane	92.13	91.67
GSMUA_Achr8P06200_001	Banana	cytosol	91.37	91.6
TraesCS6D01G159100.1	Wheat	plastid	91.88	91.41
TraesCS6B01G197300.1	Wheat	cytosol	91.88	91.41
TraesCS6A01G169300.1	Wheat	cytosol	91.88	91.41
EES02825	Sorghum	cytosol	91.62	91.16
GSMUA_Achr1P15960_001	Banana	cytosol	91.12	91.12
Os01t0293000-01	Rice	cytosol	91.37	90.91
Os05t0135700-01	Rice	cytosol	91.37	90.91
EES17665	Sorghum	cytosol	91.37	90.91
KRH33763	Soybean	endoplasmic reticulum	88.32	89.46
VIT_07s0005g02230.t01	Wine grape	cytosol	92.64	87.53
KRH32501	Soybean	cytosol	86.29	87.18
KRH19887	Soybean	endoplasmic reticulum	86.29	87.18
KRH67734	Soybean	endoplasmic reticulum	86.04	86.92
GSMUA_Achr1P18400_001	Banana	cytosol	32.23	86.39
KRH69160	Soybean	cytosol	43.91	82.78
KRG96026	Soybean	cytosol	12.18	71.64

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:100812341	Gene3D:3.30.300.10	MapMan:7.3.1	EMBL:ACUP02002106	InterPro:ADOMET_SYNTHASE_CS
EnsemblPlantsGene:GLYMA_03G223000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006556	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	UniProt:I1JQV8	EnsemblPlants:KRH68318	ProteinID:KRH68318	ProteinID:KRH68318.1
ProteinID:KRH68319.1	HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497
ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF21	MetaCyc:PWY-5041	MetaCyc:PWY-5912
InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973
TIGRFAMs:TIGR01034	UniParc:UPI0002339D6B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:42579553..42582328

Molecular Weight (calculated)

43226.3 Da

IEP (calculated)

5.750

GRAVY (calculated)

-0.337

Length

394 amino acids

Sequence
(BLAST)

001: MAQETFLFTS ESVNEGHPDK LCDQISDAVL DACLEQDPDS KVACETCTKT NMVMVFGEIT TKANVDYEKI VRDTCREIGF ISDDVGLDAD KCKVLVNIEQ
101: QSPDIAQGVH GHFTKRPEEV GAGDQGHMFG YATDETPEYM PLSHVLATKL GARLTEVRKN GTCAWLRPDG KTQVTVEYYN DNGAMVPVRV HTVLISTQHD
201: ETVSNDQIAA DLKEHVIKPV IPEKYLDEKT IFHLNPSGRF VIGGPHGDAG LTGRKIIIDT YGGWGAHGGG AFSGKDPTKV DRSGAYIVRQ AAKSVVANGL
301: ARRCIVQVSY AIGVPEPLSV FVDTYGTGKI PDKEILQIVK ENFDFRPGMI TINLDLKRGG HRFLKTAAYG HFGRDDADFT WEVVKPLKSE KPQA

Best Arabidopsis Sequence Match ( AT4G01850.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM2S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V3V9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.