CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047146	Potato	cytosol	91.77	90.84
Solyc01g101060.2.1	Tomato	extracellular, nucleus, plastid	91.52	90.59
KRH50640	Soybean	endoplasmic reticulum	91.26	90.56
KRH02438	Soybean	endoplasmic reticulum, nucleus	91.26	90.56
KRH12731	Soybean	endoplasmic reticulum	91.77	90.38
KRH02439	Soybean	nucleus	91.0	90.31
GSMUA_Achr1P15960_001	Banana	cytosol	91.26	90.1
GSMUA_Achr3P12780_001	Banana	cytosol	91.26	90.1
GSMUA_Achr8P06200_001	Banana	cytosol	90.49	89.57
VIT_14s0060g00480.t01	Wine grape	cytosol	91.26	88.97
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	89.72	88.58
KRH68318	Soybean	endoplasmic reticulum	89.46	88.32
HORVU6Hr1G034650.1	Barley	plasma membrane	89.72	88.13
EES02825	Sorghum	cytosol	89.72	88.13
Os01t0293000-01	Rice	cytosol	89.72	88.13
Os05t0135700-01	Rice	cytosol	89.46	87.88
EES17665	Sorghum	cytosol	89.46	87.88
TraesCS6A01G169300.1	Wheat	cytosol	88.95	87.37
TraesCS6B01G197300.1	Wheat	cytosol	88.95	87.37
TraesCS6D01G159100.1	Wheat	plastid	88.95	87.37
KRH19887	Soybean	endoplasmic reticulum	86.63	86.41
KRH32501	Soybean	cytosol	86.12	85.9
KRH67734	Soybean	endoplasmic reticulum	85.6	85.38
GSMUA_Achr1P18400_001	Banana	cytosol	31.36	82.99
KRH69160	Soybean	cytosol	40.87	76.08
KRG96026	Soybean	cytosol	12.34	71.64

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:100778809	Gene3D:3.30.300.10	MapMan:7.3.1	EMBL:ACUP02006554	InterPro:ADOMET_SYNTHASE_CS
EnsemblPlantsGene:GLYMA_10G144300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006556	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	UniProt:I1LB04	EnsemblPlants:KRH33763	ProteinID:KRH33763	ProteinID:KRH33763.1
HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376
ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF16	MetaCyc:PWY-5041	MetaCyc:PWY-5912	InterPro:S-AdoMet_synt_C
InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034
UniParc:UPI000233C7D4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:37916177..37918921

Molecular Weight (calculated)

42622.8 Da

IEP (calculated)

5.431

GRAVY (calculated)

-0.259

Length

389 amino acids

Sequence
(BLAST)

001: MDTFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPESKV ACETCTKTNL VMVFGEITTK ANIDYEKIVR DTCRSIGFVS GDVGLDADKC KVLVYLEQQS
101: PDIAQGVHGH LTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKLGM QLTEVRKNEI CPWLRPDGKT QVTVEYANDH GAMVPVRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP EKYLDEETIF HLNPSGRFVI GGPHGDAGLT GRKIIVDTYG GWGAHGGGAF SGKDPTKVDR SGAYIARQAA KSIVANGLAR
301: RCIVQISYAI GVPEPLSVFV DTFGTGKIPD KDILKLVKEK FDFRPGIISI NLDLKRGASG RFLKTAAYGH FGRDDPDFTW EVVKPLKWE

Best Arabidopsis Sequence Match ( AT1G02500.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATVDYEKIVR DTCRAIGFVS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKCPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CAWLRPDGKT QVTVEYYNDK GAMVPIRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYETGLIPD KEILKIVKES FDFRPGMMTI NLDLKRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM1S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178WES1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.