CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02439	Soybean	nucleus	98.72	98.72
KRH02438	Soybean	endoplasmic reticulum, nucleus	98.21	98.21
KRH12731	Soybean	endoplasmic reticulum	94.9	94.18
PGSC0003DMT400011943	Potato	cytosol	93.88	93.64
Solyc12g099000.1.1	Tomato	nucleus	93.88	93.64
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	93.88	93.4
KRH68318	Soybean	endoplasmic reticulum	93.62	93.15
GSMUA_Achr3P12780_001	Banana	cytosol	92.6	92.13
GSMUA_Achr8P06200_001	Banana	cytosol	92.35	92.11
TraesCS6D01G159100.1	Wheat	plastid	92.86	91.92
TraesCS6B01G197300.1	Wheat	cytosol	92.86	91.92
TraesCS6A01G169300.1	Wheat	cytosol	92.86	91.92
EES02825	Sorghum	cytosol	92.6	91.67
HORVU6Hr1G034650.1	Barley	plasma membrane	92.6	91.67
GSMUA_Achr1P15960_001	Banana	cytosol	92.09	91.62
Os05t0135700-01	Rice	cytosol	92.35	91.41
KRH33763	Soybean	endoplasmic reticulum	90.56	91.26
Os01t0293000-01	Rice	cytosol	91.84	90.91
EES17665	Sorghum	cytosol	91.07	90.15
VIT_05s0020g00670.t01	Wine grape	cytosol	95.15	88.6
KRH67734	Soybean	endoplasmic reticulum	87.76	88.21
KRH32501	Soybean	cytosol	87.5	87.95
KRH19887	Soybean	endoplasmic reticulum	87.5	87.95
GSMUA_Achr1P18400_001	Banana	cytosol	32.65	87.07
KRH69160	Soybean	cytosol	42.35	79.43
KRG96026	Soybean	cytosol	12.5	73.13

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:100820392	Gene3D:3.30.300.10	MapMan:7.3.1	EMBL:ACUP02004709	InterPro:ADOMET_SYNTHASE_CS
EnsemblPlantsGene:GLYMA_07G233800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006556	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	UniProt:I1LVJ0	EnsemblPlants:KRH50640	ProteinID:KRH50640	ProteinID:KRH50640.1
HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376
ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF33	MetaCyc:PWY-5041	MetaCyc:PWY-5912	InterPro:S-AdoMet_synt_C
InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034
UniParc:UPI000233D9DC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:41487312..41489914

Molecular Weight (calculated)

43057.1 Da

IEP (calculated)

5.909

GRAVY (calculated)

-0.330

Length

392 amino acids

Sequence
(BLAST)

001: MAETFLFTSE SVNEGHPDKL CDQISDAVLD ACLEQDPDSK VACETCTKTN LVMVFGEITT KANVDYEKIV RDTCRSIGFI SNDVGLDADN CKVLVNIEQQ
101: SPDIAQGVHG HLTKRPEEIG AGDQGHMFGY ATDETPEFMP LSHVLATKLG ARLTEVRKNG TCPWLRPDGK TQVTVEYYND NGARVPVRVH TVLISTQHDE
201: TVTNDEIAAD LKEHVIKPVI PEKYLDEKTI FHLNPSGRFV IGGPHGDAGL TGRKIIIDTY GGWGAHGGGA FSGKDPTKVD RSGAYIVRQA AKSIVASGLA
301: RRCIVQVSYA IGVPEPLSVF VDTYGTGKIH DKEILNIVKE NFDFRPGMIS INLDLKRGGN NRFLKTAAYG HFGREDPDFT WEVVKPLKWE KA

Best Arabidopsis Sequence Match ( AT4G01850.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM2S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V3V9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.