Factsheet for PGSC0003DMT400011943

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099000.1.1	Tomato	nucleus	98.98	98.98
PGSC0003DMT400047146	Potato	cytosol	95.17	95.17
KRH02439	Soybean	nucleus	93.89	94.13
KRH02438	Soybean	endoplasmic reticulum, nucleus	93.64	93.88
KRH50640	Soybean	endoplasmic reticulum	93.64	93.88
KRH12731	Soybean	endoplasmic reticulum	93.89	93.42
Os01t0293000-01	Rice	cytosol	92.62	91.92
GSMUA_Achr3P12780_001	Banana	cytosol	92.11	91.88
GSMUA_Achr8P06200_001	Banana	cytosol	91.35	91.35
EES17665	Sorghum	cytosol	91.86	91.16
Os05t0135700-01	Rice	cytosol	91.86	91.16
EES02825	Sorghum	cytosol	91.6	90.91
GSMUA_Achr1P15960_001	Banana	cytosol	91.09	90.86
HORVU6Hr1G034650.1	Barley	plasma membrane	91.35	90.66
TraesCS6A01G169300.1	Wheat	cytosol	91.09	90.4
TraesCS6B01G197300.1	Wheat	cytosol	91.09	90.4
TraesCS6D01G159100.1	Wheat	plastid	91.09	90.4
PGSC0003DMT400087679	Potato	cytosol	89.57	90.26
PGSC0003DMT400072701	Potato	cytosol	88.04	88.72
VIT_05s0020g00670.t01	Wine grape	cytosol	94.91	88.6
GSMUA_Achr1P18400_001	Banana	cytosol	32.57	87.07
Zm00001d008175_P001	Maize	cytosol	11.96	55.95

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:102591461	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0006556
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046872	UniProt:M1A0F3	HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773
EnsemblPlantsGene:PGSC0003DMG400004688	PGSC:PGSC0003DMG400004688	EnsemblPlants:PGSC0003DMT400011943	PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377
PANTHER:PTHR11964	PANTHER:PTHR11964:SF16	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase
InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034	UniParc:UPI0002966EE6	RefSeq:XP_006349861.1	SEG:seg

Description

S-adenosylmethionine synthase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004688]

Coordinates

chr12:-:59802971..59805338

Molecular Weight (calculated)

43102.3 Da

IEP (calculated)

5.600

GRAVY (calculated)

-0.314

Length

393 amino acids

Sequence
(BLAST)

001: METFLFTSES VNEGHPDKLC DQVSDAVLDA CLAQDPESKV ACETCTKTNL VMVFGEITTK ANIDYEKIVR DTCREIGFVS PDVGLDADNC RVLVNIEQQS
101: PDIAQGVHGH LTKRPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CSWLRPDGKT QVTVEYQNDN GAMIPLRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVANGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYGTGKIPD KEILNIVKEN FDFRPGMISI NLDLLRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Best Arabidopsis Sequence Match ( AT4G01850.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM2S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V3V9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.