CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
vacuole 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02439	Soybean	nucleus	94.94	95.66
KRH02438	Soybean	endoplasmic reticulum, nucleus	94.43	95.15
KRH50640	Soybean	endoplasmic reticulum	94.18	94.9
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	94.18	94.42
KRH68318	Soybean	endoplasmic reticulum	93.92	94.16
Solyc12g099000.1.1	Tomato	nucleus	93.42	93.89
PGSC0003DMT400011943	Potato	cytosol	93.42	93.89
EES17665	Sorghum	cytosol	93.67	93.43
GSMUA_Achr3P12780_001	Banana	cytosol	93.16	93.4
GSMUA_Achr1P15960_001	Banana	cytosol	92.66	92.89
HORVU6Hr1G034650.1	Barley	plasma membrane	92.15	91.92
Os05t0135700-01	Rice	cytosol	92.15	91.92
EES02825	Sorghum	cytosol	92.15	91.92
GSMUA_Achr8P06200_001	Banana	cytosol	91.39	91.86
KRH33763	Soybean	endoplasmic reticulum	90.38	91.77
TraesCS6A01G169300.1	Wheat	cytosol	91.65	91.41
TraesCS6B01G197300.1	Wheat	cytosol	91.65	91.41
TraesCS6D01G159100.1	Wheat	plastid	91.65	91.41
Os01t0293000-01	Rice	cytosol	91.39	91.16
VIT_05s0020g00670.t01	Wine grape	cytosol	95.7	89.79
KRH19887	Soybean	endoplasmic reticulum	88.1	89.23
GSMUA_Achr1P18400_001	Banana	cytosol	33.16	89.12
KRH32501	Soybean	cytosol	87.85	88.97
KRH67734	Soybean	endoplasmic reticulum	87.34	88.46
KRH69160	Soybean	cytosol	42.53	80.38
KRG96026	Soybean	cytosol	12.41	73.13

Protein Annotations

KEGG:00270+2.5.1.6	EntrezGene:100787994	Gene3D:3.30.300.10	MapMan:7.3.1	EMBL:ACUP02009378	InterPro:ADOMET_SYNTHASE_CS
EnsemblPlantsGene:GLYMA_15G190500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006556	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	UniProt:I1MHR0	EnsemblPlants:KRH12731	ProteinID:KRH12731	ProteinID:KRH12731.1
HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376
ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF35	MetaCyc:PWY-5041	MetaCyc:PWY-5912	InterPro:S-AdoMet_synt_C
InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034
UniParc:UPI000233B020	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:20336172..20338805

Molecular Weight (calculated)

43055.2 Da

IEP (calculated)

5.603

GRAVY (calculated)

-0.304

Length

395 amino acids

Sequence
(BLAST)

001: MAQETFLFTS ESVNEGHPDK LCDQISDAVL DACLEQDPDS KVACETCTKT NMVMVFGEIT TKANVDYEKI VRDTCRNIGF VSDDVGLDAD NCKVLVNIEQ
101: QSPDIAQGVH GHLTKRPEEI GAGDQGHMFG YATDETPELM PLSHVLATKL GAKLTEVRKN GTCPWLRPDG KTQVTVEYYN DKGAMVPIRV HTVLISTQHD
201: ETVTNDEIAA DLKEHVIKPV IPEKYLDEKT IFHLNPSGRF VIGGPHGDAG LTGRKIIIDT YGGWGAHGGG AFSGKDPTKV DRSGAYIVRQ AAKSIVANGL
301: ARRAIVQVSY AIGVPEPLSV FVDTYGTGKI PDKEILSIVK ESFDFRPGMI SINLDLKRGG NGRFLKTAAY GHFGRDDPDF TWEVVKPLKG EKVPA

Best Arabidopsis Sequence Match ( AT3G17390.1 )
(BLAST)

001: MESFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ANVDYEQIVR KTCREIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEVGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNGT CPWLRPDGKT QVTIEYINES GAMVPVRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RVIVQVSYAI GVPEPLSVFV DSYGTGKIPD KEILEIVKES FDFRPGMISI NLDLKRGGNG RFLKTAAYGH FGRDDADFTW EVVKPLKSNK VQA

Arabidopsis Description

METK4S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VIP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.