CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02438	Soybean	endoplasmic reticulum, nucleus	98.98	98.98
KRH50640	Soybean	endoplasmic reticulum	98.72	98.72
KRH12731	Soybean	endoplasmic reticulum	95.66	94.94
PGSC0003DMT400011943	Potato	cytosol	94.13	93.89
Solyc12g099000.1.1	Tomato	nucleus	94.13	93.89
KRG96585	Soybean	cytosol, endoplasmic reticulum, nucleus	93.11	92.64
KRH68318	Soybean	endoplasmic reticulum	92.86	92.39
GSMUA_Achr3P12780_001	Banana	cytosol	92.86	92.39
EES02825	Sorghum	cytosol	92.86	91.92
TraesCS6A01G169300.1	Wheat	cytosol	92.86	91.92
TraesCS6B01G197300.1	Wheat	cytosol	92.86	91.92
TraesCS6D01G159100.1	Wheat	plastid	92.86	91.92
GSMUA_Achr1P15960_001	Banana	cytosol	92.35	91.88
GSMUA_Achr8P06200_001	Banana	cytosol	92.09	91.86
HORVU6Hr1G034650.1	Barley	plasma membrane	92.6	91.67
Os05t0135700-01	Rice	cytosol	92.6	91.67
Os01t0293000-01	Rice	cytosol	92.09	91.16
KRH33763	Soybean	endoplasmic reticulum	90.31	91.0
EES17665	Sorghum	cytosol	91.84	90.91
KRH67734	Soybean	endoplasmic reticulum	88.78	89.23
VIT_05s0020g00670.t01	Wine grape	cytosol	95.66	89.07
KRH32501	Soybean	cytosol	88.52	88.97
KRH19887	Soybean	endoplasmic reticulum	88.52	88.97
GSMUA_Achr1P18400_001	Banana	cytosol	32.91	87.76
KRH69160	Soybean	cytosol	42.35	79.43
KRG96026	Soybean	cytosol	12.5	73.13

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	EMBL:ACUP02010305	InterPro:ADOMET_SYNTHASE_CS	EnsemblPlantsGene:GLYMA_17G039100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006556
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046872	UniProt:I1MRW8	EnsemblPlants:KRH02439	ProteinID:KRH02439	ProteinID:KRH02439.1	HAMAP:MF_00086
PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377
PANTHER:PTHR11964	PANTHER:PTHR11964:SF33	MetaCyc:PWY-5041	MetaCyc:PWY-5912	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N
InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034	UniParc:UPI000233EC59
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:2895409..2897652

Molecular Weight (calculated)

43022.1 Da

IEP (calculated)

5.909

GRAVY (calculated)

-0.333

Length

392 amino acids

Sequence
(BLAST)

001: MAETFLFTSE SVNEGHPDKL CDQISDAVLD ACLEQDPDSK VACETCTKTN LVMVFGEITT KANVDYEKIV RDTCRNIGFV SNDVGLDADN CKVLVNIEQQ
101: SPDIAQGVHG HLTKKPEEIG AGDQGHMFGY ATDETPELMP LSHVLATKLG ARLTEVRKNG TCPWLRPDGK TQVTVEYYND NGARVPIRVH TVLISTQHDE
201: TVTNDEIAAD LKEHVIKPVI PEKYLDEKTI FHLNPSGRFV IGGPHGDAGL TGRKIIIDTY GGWGAHGGGA FSGKDPTKVD RSGAYIVRQA AKSIVASGLA
301: RRCIVQVSYA IGVPEPLSVF VDTYGTGKIH DKEILNIVKE NFDFRPGMIS INLDLKRGGN NRFLKTAAYG HFGREDPDFT WEVVKPLKWE KA

Best Arabidopsis Sequence Match ( AT3G17390.1 )
(BLAST)

001: MESFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ANVDYEQIVR KTCREIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEVGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNGT CPWLRPDGKT QVTIEYINES GAMVPVRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RVIVQVSYAI GVPEPLSVFV DSYGTGKIPD KEILEIVKES FDFRPGMISI NLDLKRGGNG RFLKTAAYGH FGRDDADFTW EVVKPLKSNK VQA

Arabidopsis Description

METK4S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VIP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.