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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 4
  • vacuole 1
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400011943 Potato cytosol 98.98 98.98
Solyc01g101060.2.1 Tomato extracellular, nucleus, plastid 94.66 94.66
KRH02439 Soybean nucleus 93.89 94.13
KRH02438 Soybean endoplasmic reticulum, nucleus 93.64 93.88
KRH50640 Soybean endoplasmic reticulum 93.64 93.88
KRH12731 Soybean endoplasmic reticulum 93.89 93.42
Solyc09g008280.1.1 Tomato nucleus 90.33 91.03
Solyc10g083970.1.1 Tomato nucleus, unclear 88.3 88.97
VIT_05s0020g00670.t01 Wine grape cytosol 94.91 88.6
Solyc04g049200.1.1 Tomato cytosol 18.58 76.04
Zm00001d008175_P001 Maize cytosol 11.96 55.95
Protein Annotations
KEGG:00270+2.5.1.6Gene3D:3.30.300.10MapMan:7.3.1InterPro:ADOMET_SYNTHASE_CSProteinID:CAA80866.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004478GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0006556GO:GO:0006730
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0046872
HAMAP:MF_00086UniProt:P43281PFAM:PF00438PFAM:PF02772PFAM:PF02773PIRSF:PIRSF000497
ScanProsite:PS00376ScanProsite:PS00377PANTHER:PTHR11964PANTHER:PTHR11964:SF16InterPro:S-AdoMet_synt_CInterPro:S-AdoMet_synt_N
InterPro:S-AdoMet_synt_centralInterPro:S-AdoMet_synthetaseInterPro:S-AdoMet_synthetase_sfamSUPFAM:SSF55973EnsemblPlantsGene:Solyc12g099000.1EnsemblPlants:Solyc12g099000.1.1
TIGRFAMs:TIGR01034UniParc:UPI000012EFF4SEG:seg:::
Description
SAM2S-adenosylmethionine synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:P43281]
Coordinates
chr12:-:66317212..66318393
Molecular Weight (calculated)
43084.1 Da
IEP (calculated)
5.429
GRAVY (calculated)
-0.313
Length
393 amino acids
Sequence
(BLAST)
001: METFLFTSES VNEGHPDKLC DQVSDAVLDA CLAQDPESKV ACETCTKTNL VMVFGEITTK ANIDYEKIVR DTCREIGFVS PDVGLDADNC RVLVNIEQQS
101: PDIAQGVHGH LTKRPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CSWLRPDGKT QVTVEYHNDN GAMVPLRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDENTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVANGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYGTGKIPD KEILNIVKEN FDFRPGMISI NLDLLRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWDK PEA
Best Arabidopsis Sequence Match ( AT4G01850.1 )
(BLAST)
001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA
Arabidopsis Description
SAM2S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178V3V9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.