Factsheet for Solyc10g083970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072701	Potato	cytosol	98.72	98.72
Solyc09g008280.1.1	Tomato	nucleus	96.15	96.15
Bra017219.1-P	Field mustard	cytosol	94.36	94.36
AT2G36880.1	Thale cress	cytosol	94.1	94.1
Bra005236.1-P	Field mustard	cytosol	90.0	94.1
CDX75007	Canola	cytosol	90.0	94.1
CDY33203	Canola	cytosol	90.0	94.1
Bra023084.1-P	Field mustard	cytosol	93.85	93.85
KRH19887	Soybean	endoplasmic reticulum	93.85	93.85
CDY46742	Canola	cytosol	90.0	93.6
KRH32501	Soybean	cytosol	93.59	93.59
CDX79695	Canola	cytosol	89.74	93.33
VIT_06s0061g00500.t01	Wine grape	cytosol	93.33	93.09
KRH67734	Soybean	endoplasmic reticulum	93.08	93.08
Solyc01g101060.2.1	Tomato	extracellular, nucleus, plastid	89.23	88.55
Solyc12g099000.1.1	Tomato	nucleus	88.97	88.3
VIT_08s0007g05000.t01	Wine grape	cytosol	84.62	74.16
Solyc04g049200.1.1	Tomato	cytosol	17.18	69.79

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006556	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	UniProt:K4D3I3
HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376
ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF36	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central
InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	EnsemblPlantsGene:Solyc10g083970.1	EnsemblPlants:Solyc10g083970.1.1	TIGRFAMs:TIGR01034
UniParc:UPI000276A0C6	SEG:seg	:	:	:	:

Description

S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:K4D3I3]

Coordinates

chr10:-:63665213..63666385

Molecular Weight (calculated)

42662.0 Da

IEP (calculated)

6.571

GRAVY (calculated)

-0.313

Length

390 amino acids

Sequence
(BLAST)

001: METFLFTSES VNEGHPDKLC DQVSDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK AKVDYEKIVR DTCRGIGFTS PDVGLDADHC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDN GAMVPIRVHT VLISTQHDET
201: VTNDQIAKEL KEHVIKPVIP AQYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVAEPLSVFV DTYKTGTIPD KDILVLIKEN FDFRPGMMSI NLDLKRGGNF RYQKTAAYGH FGRDDADFTW ETVKALKPKA

Best Arabidopsis Sequence Match ( AT2G36880.2 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTA AKVDYEKIVR STCREIGFIS ADVGLDADKC NVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDG GAMIPIRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP AKYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYKTGTIPD KDILVLIKEA FDFRPGMMAI NLDLKRGGNF RFQKTAAYGH FGRDDPDFTW EVVKPLKPKA

Arabidopsis Description

METK3S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VXF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.