Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- vacuole 1
- plastid 1
- mitochondrion 1
- cytoskeleton 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
25464976
unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400087679 | Potato | cytosol | 98.46 | 98.46 |
Solyc10g083970.1.1 | Tomato | nucleus, unclear | 96.15 | 96.15 |
KRH19887 | Soybean | endoplasmic reticulum | 94.62 | 94.62 |
Bra023084.1-P | Field mustard | cytosol | 94.1 | 94.1 |
CDX79695 | Canola | cytosol | 90.26 | 93.87 |
CDY46742 | Canola | cytosol | 90.26 | 93.87 |
AT2G36880.1 | Thale cress | cytosol | 93.85 | 93.85 |
KRH32501 | Soybean | cytosol | 93.85 | 93.85 |
CDX75007 | Canola | cytosol | 89.74 | 93.83 |
CDY33203 | Canola | cytosol | 89.74 | 93.83 |
Bra017219.1-P | Field mustard | cytosol | 93.59 | 93.59 |
Bra005236.1-P | Field mustard | cytosol | 89.49 | 93.57 |
VIT_06s0061g00500.t01 | Wine grape | cytosol | 93.59 | 93.35 |
KRH67734 | Soybean | endoplasmic reticulum | 93.08 | 93.08 |
Solyc01g101060.2.1 | Tomato | extracellular, nucleus, plastid | 91.28 | 90.59 |
Solyc12g099000.1.1 | Tomato | nucleus | 91.03 | 90.33 |
VIT_08s0007g05000.t01 | Wine grape | cytosol | 84.87 | 74.38 |
Solyc04g049200.1.1 | Tomato | cytosol | 17.69 | 71.88 |
Protein Annotations
KEGG:00270+2.5.1.6 | Gene3D:3.30.300.10 | MapMan:7.3.1 | InterPro:ADOMET_SYNTHASE_CS | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004478 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006556 | GO:GO:0006730 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 | HAMAP:MF_00086 |
UniProt:P43282 | PFAM:PF00438 | PFAM:PF02772 | PFAM:PF02773 | PIRSF:PIRSF000497 | ScanProsite:PS00376 |
ScanProsite:PS00377 | PANTHER:PTHR11964 | PANTHER:PTHR11964:SF36 | InterPro:S-AdoMet_synt_C | InterPro:S-AdoMet_synt_N | InterPro:S-AdoMet_synt_central |
InterPro:S-AdoMet_synthetase | InterPro:S-AdoMet_synthetase_sfam | SUPFAM:SSF55973 | EnsemblPlantsGene:Solyc09g008280.1 | EnsemblPlants:Solyc09g008280.1.1 | TIGRFAMs:TIGR01034 |
UniParc:UPI000012EFFC | EMBL:Z24743 | SEG:seg | : | : | : |
Description
SAM3S-adenosylmethionine synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:P43282]
Coordinates
chr9:+:1749950..1751122
Molecular Weight (calculated)
42654.9 Da
IEP (calculated)
6.093
GRAVY (calculated)
-0.283
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: METFLFTSES VNEGHPDKLC DQVSDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ATVDYEKIVR DTCRGIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDN GAMVPIRVHT VLISTQHDET
201: VTNDQIAQDL KEHVIKPVIP AKYLDENTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVASGLAR
301: RCIVQVSYAI GVAEPLSVFV DTYKTGTIPD KDILVLIKEN FDFRPGMMSI NLDLLRGGNY RYQKTAAYGH FGRDDPDFTW ETVKVLKPKA
101: PDIAQGVHGH LTKKPEEIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDN GAMVPIRVHT VLISTQHDET
201: VTNDQIAQDL KEHVIKPVIP AKYLDENTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVASGLAR
301: RCIVQVSYAI GVAEPLSVFV DTYKTGTIPD KDILVLIKEN FDFRPGMMSI NLDLLRGGNY RYQKTAAYGH FGRDDPDFTW ETVKVLKPKA
001: METFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTA AKVDYEKIVR STCREIGFIS ADVGLDADKC NVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDG GAMIPIRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP AKYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYKTGTIPD KDILVLIKEA FDFRPGMMAI NLDLKRGGNF RFQKTAAYGH FGRDDPDFTW EVVKPLKPKA
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDG GAMIPIRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP AKYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYKTGTIPD KDILVLIKEA FDFRPGMMAI NLDLKRGGNF RFQKTAAYGH FGRDDPDFTW EVVKPLKPKA
Arabidopsis Description
METK3S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VXF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.