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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • plastid 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400087679 Potato cytosol 98.46 98.46
Solyc10g083970.1.1 Tomato nucleus, unclear 96.15 96.15
KRH19887 Soybean endoplasmic reticulum 94.62 94.62
Bra023084.1-P Field mustard cytosol 94.1 94.1
CDX79695 Canola cytosol 90.26 93.87
CDY46742 Canola cytosol 90.26 93.87
AT2G36880.1 Thale cress cytosol 93.85 93.85
KRH32501 Soybean cytosol 93.85 93.85
CDX75007 Canola cytosol 89.74 93.83
CDY33203 Canola cytosol 89.74 93.83
Bra017219.1-P Field mustard cytosol 93.59 93.59
Bra005236.1-P Field mustard cytosol 89.49 93.57
VIT_06s0061g00500.t01 Wine grape cytosol 93.59 93.35
KRH67734 Soybean endoplasmic reticulum 93.08 93.08
Solyc01g101060.2.1 Tomato extracellular, nucleus, plastid 91.28 90.59
Solyc12g099000.1.1 Tomato nucleus 91.03 90.33
VIT_08s0007g05000.t01 Wine grape cytosol 84.87 74.38
Solyc04g049200.1.1 Tomato cytosol 17.69 71.88
Protein Annotations
KEGG:00270+2.5.1.6Gene3D:3.30.300.10MapMan:7.3.1InterPro:ADOMET_SYNTHASE_CSGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004478GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0006556GO:GO:0006730GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0046872HAMAP:MF_00086
UniProt:P43282PFAM:PF00438PFAM:PF02772PFAM:PF02773PIRSF:PIRSF000497ScanProsite:PS00376
ScanProsite:PS00377PANTHER:PTHR11964PANTHER:PTHR11964:SF36InterPro:S-AdoMet_synt_CInterPro:S-AdoMet_synt_NInterPro:S-AdoMet_synt_central
InterPro:S-AdoMet_synthetaseInterPro:S-AdoMet_synthetase_sfamSUPFAM:SSF55973EnsemblPlantsGene:Solyc09g008280.1EnsemblPlants:Solyc09g008280.1.1TIGRFAMs:TIGR01034
UniParc:UPI000012EFFCEMBL:Z24743SEG:seg:::
Description
SAM3S-adenosylmethionine synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:P43282]
Coordinates
chr9:+:1749950..1751122
Molecular Weight (calculated)
42654.9 Da
IEP (calculated)
6.093
GRAVY (calculated)
-0.283
Length
390 amino acids
Sequence
(BLAST)
001: METFLFTSES VNEGHPDKLC DQVSDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ATVDYEKIVR DTCRGIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDN GAMVPIRVHT VLISTQHDET
201: VTNDQIAQDL KEHVIKPVIP AKYLDENTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVASGLAR
301: RCIVQVSYAI GVAEPLSVFV DTYKTGTIPD KDILVLIKEN FDFRPGMMSI NLDLLRGGNY RYQKTAAYGH FGRDDPDFTW ETVKVLKPKA
Best Arabidopsis Sequence Match ( AT2G36880.2 )
(BLAST)
001: METFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTA AKVDYEKIVR STCREIGFIS ADVGLDADKC NVLVNIEQQS
101: PDIAQGVHGH LTKKPEDIGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNKT CPWLRPDGKT QVTVEYKNDG GAMIPIRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP AKYLDDNTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVAAGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYKTGTIPD KDILVLIKEA FDFRPGMMAI NLDLKRGGNF RFQKTAAYGH FGRDDPDFTW EVVKPLKPKA
Arabidopsis Description
METK3S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VXF8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.