Factsheet for Solyc01g101060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

cytosol 3
vacuole 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047146	Potato	cytosol	98.22	98.22
Solyc12g099000.1.1	Tomato	nucleus	94.66	94.66
VIT_14s0060g00480.t01	Wine grape	cytosol	93.13	91.73
KRH33763	Soybean	endoplasmic reticulum	90.59	91.52
Solyc09g008280.1.1	Tomato	nucleus	90.59	91.28
Solyc10g083970.1.1	Tomato	nucleus, unclear	88.55	89.23
Solyc04g049200.1.1	Tomato	cytosol	18.07	73.96
Zm00001d008175_P001	Maize	cytosol	11.96	55.95

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006556	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	HAMAP:MF_00086
UniProt:P43280	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376
ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF16	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central
InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	EnsemblPlantsGene:Solyc01g101060.2	EnsemblPlants:Solyc01g101060.2.1	TIGRFAMs:TIGR01034
UniParc:UPI000012EFB6	EMBL:Z24741	SEG:seg	:	:	:

Description

SAM1S-adenosylmethionine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P43280]

Coordinates

chr1:+:90918019..90920622

Molecular Weight (calculated)

43303.5 Da

IEP (calculated)

5.608

GRAVY (calculated)

-0.335

Length

393 amino acids

Sequence
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPESKV ACETCTKTNL VMVFGEITTK AIVDYEKIVR DTCRNIGFVS DDVGLDADNC KVLVYIEQQS
101: PDIAQGVHGH LTKRPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CAWLRPDGKT QVTVEYSNDN GAMVPIRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDENTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RCIVQVSYAI GVPEPLSVFV DTYGTGKIPD REILKIVKEN FDFRPGMMSI NLDLKRGGNR RFLKTAAYGH FGRDDPDFTW EVVKPLKWEK PQD

Best Arabidopsis Sequence Match ( AT1G02500.2 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATVDYEKIVR DTCRAIGFVS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKCPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CAWLRPDGKT QVTVEYYNDK GAMVPIRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYETGLIPD KEILKIVKES FDFRPGMMTI NLDLKRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM1S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178WES1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.