Factsheet for HORVU6Hr1G063540.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G063560.1	Barley	cytosol	99.75	99.75
HORVU6Hr1G063570.1	Barley	cytosol	99.75	99.75
TraesCS6B01G276800.1	Wheat	cytosol	99.49	99.49
TraesCS6D01G230000.1	Wheat	cytosol	98.98	98.98
TraesCS6A01G247900.2	Wheat	cytosol, mitochondrion	99.49	91.16
HORVU6Hr1G034650.1	Barley	plasma membrane	89.59	89.14
HORVU6Hr1G063490.2	Barley	cytosol	97.21	86.85

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	EMBL:AK360793	UniProt:F2DA80
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006556	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872
EnsemblPlantsGene:HORVU6Hr1G063540	EnsemblPlants:HORVU6Hr1G063540.1	HAMAP:MF_00086	PFAM:PF00438	PFAM:PF02772	PFAM:PF02773
PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964	PANTHER:PTHR11964:SF16	InterPro:S-AdoMet_synt_C
InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam	SUPFAM:SSF55973	TIGRFAMs:TIGR01034
UniParc:UPI000054B58F	SEG:seg	:	:	:	:

Description

S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:F2DA80]

Coordinates

chrchr6H:-:428127918..428130588

Molecular Weight (calculated)

42816.0 Da

IEP (calculated)

5.596

GRAVY (calculated)

-0.219

Length

394 amino acids

Sequence
(BLAST)

001: MAAETFLFTS ESVNEGHPDK LCDQVSDAVL DACLAQDPDS KVACETCTKT NMVMVFGEIT TKATVDYEKI VRDTCRDIGF ISDDVGLDAD HCKVLVNIEQ
101: QSPDIAQGVH GHFTKRPEEV GAGDQGIMFG YATDETPELM PLTHMLATKL GARLTEVRKN GTCAWLRPDG KTQVTIEYLN EGGAMVPVRV HTVLISTQHD
201: ETVTNDEIAA DLKEHVIKPV IPGKYLDENT IFHLNPSGRF VIGGPHGDAG LTGRKIIIDT YGGWGAHGGG AFSGKDPTKV DRSGAYIARQ AAKSIIASGL
301: ARRCIVQISY AIGVPEPLSV FVDSYGTGKI PDREILKLVK ENFDFRPGMI SINLDLKKGG NRFIKTAAYG HFGRDDADFT WEVVKPLKFD KASA

Best Arabidopsis Sequence Match ( AT3G17390.1 )
(BLAST)

001: MESFLFTSES VNEGHPDKLC DQISDAILDA CLEQDPESKV ACETCTKTNM VMVFGEITTK ANVDYEQIVR KTCREIGFVS ADVGLDADNC KVLVNIEQQS
101: PDIAQGVHGH LTKKPEEVGA GDQGHMFGYA TDETPELMPL THVLATKLGA KLTEVRKNGT CPWLRPDGKT QVTIEYINES GAMVPVRVHT VLISTQHDET
201: VTNDEIAADL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSIVASGLAR
301: RVIVQVSYAI GVPEPLSVFV DSYGTGKIPD KEILEIVKES FDFRPGMISI NLDLKRGGNG RFLKTAAYGH FGRDDADFTW EVVKPLKSNK VQA

Arabidopsis Description

METK4S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VIP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.