Factsheet for TraesCS6A01G247900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 23895732

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G276800.1	Wheat	cytosol	91.4	99.75
HORVU6Hr1G063540.1	Barley	plasma membrane	91.16	99.49
TraesCS6D01G230000.1	Wheat	cytosol	91.16	99.49
HORVU6Hr1G063560.1	Barley	cytosol	90.93	99.24
HORVU6Hr1G063570.1	Barley	cytosol	90.93	99.24
TraesCS6A01G248000.1	Wheat	cytosol	89.07	97.21
TraesCS3A01G195300.1	Wheat	cytosol	88.84	96.95
TraesCS6A01G169300.1	Wheat	cytosol	82.09	89.14

Protein Annotations

KEGG:00270+2.5.1.6	Gene3D:3.30.300.10	MapMan:7.3.1	InterPro:ADOMET_SYNTHASE_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004478	GO:GO:0005488	GO:GO:0005524	GO:GO:0006556	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00086	PFAM:PF00438
PFAM:PF02772	PFAM:PF02773	PIRSF:PIRSF000497	ScanProsite:PS00376	ScanProsite:PS00377	PANTHER:PTHR11964
PANTHER:PTHR11964:SF16	InterPro:S-AdoMet_synt_C	InterPro:S-AdoMet_synt_N	InterPro:S-AdoMet_synt_central	InterPro:S-AdoMet_synthetase	InterPro:S-AdoMet_synthetase_sfam
SUPFAM:SSF55973	TIGRFAMs:TIGR01034	EnsemblPlantsGene:TraesCS6A01G247900	EnsemblPlants:TraesCS6A01G247900.2	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:459877196..459878488

Molecular Weight (calculated)

47121.9 Da

IEP (calculated)

5.428

GRAVY (calculated)

-0.211

Length

430 amino acids

Sequence
(BLAST)

001: MLCSWDSTVI LWHDSYAFDS NRWIFFHSQS IASTEEMAAE TFLFTSESVN EGHPDKLCDQ VSDAVLDACL AQDPDSKVAC ETCTKTNMVM VFGEITTKAT
101: VDYEKIVRDT CRNIGFISDD VGLDADHCKV LVNIEQQSPD IAQGVHGHFT KRPEEIGAGD QGIMFGYATD ETPELMPLTH MLATKLGARL TEVRKNGTCA
201: WLRPDGKTQV TIEYLNEGGA MVPVRVHTVL ISTQHDETVT NDEIAADLKE HVIKPVIPGK YLDENTIFHL NPSGRFVIGG PHGDAGLTGR KIIIDTYGGW
301: GAHGGGAFSG KDPTKVDRSG AYIARQAAKS IIASGLARRC IVQISYAIGV PEPLSVFVDS YGTGKIPDRE ILKLVKENFD FRPGMISINL DLKKGGNRFI
401: KTAAYGHFGR DDADFTWEVV KPLKFDKASA

Best Arabidopsis Sequence Match ( AT1G02500.1 )
(BLAST)

001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATVDYEKIVR DTCRAIGFVS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKCPEEIGA GDQGHMFGYA TDETPELMPL SHVLATKLGA RLTEVRKNGT CAWLRPDGKT QVTVEYYNDK GAMVPIRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPVIP EKYLDEKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYETGLIPD KEILKIVKES FDFRPGMMTI NLDLKRGGNG RFLKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA

Arabidopsis Description

SAM1S-adenosylmethionine synthase [Source:UniProtKB/TrEMBL;Acc:A0A178WES1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.