CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03627
CDY22835
CDY49036
CDY54388
CDY65223
CDY66467
CDY66468
CDY66732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33510.1	CDY03627	AT1G51355.1	21798944
AT4G33510.1	CDY22835	AT1G51355.1	21798944
AT4G33510.1	CDY49036	AT1G51355.1	21798944
AT4G33510.1	CDY54388	AT1G51355.1	21798944
AT4G33510.1	CDY65223	AT1G51355.1	21798944
AT4G33510.1	CDY66467	AT1G51355.1	21798944
AT4G33510.1	CDY66468	AT1G51355.1	21798944
AT4G33510.1	CDY66732	AT1G51355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75362	Canola	plastid	96.26	96.26
Bra011449.1-P	Field mustard	cytosol	84.84	96.21
AT4G33510.1	Thale cress	plastid	91.14	91.32
Solyc01g105420.2.1	Tomato	plastid	28.35	89.44
PGSC0003DMT400032681	Potato	plastid	78.94	75.95
VIT_00s1217g00010.t01	Wine grape	plastid	73.62	74.21
CDX87459	Canola	plastid	75.2	73.75
CDY04818	Canola	plastid	74.8	73.36
CDX88433	Canola	plastid	75.2	73.32
CDY41485	Canola	plastid	74.61	73.31
CDY21361	Canola	plastid	74.61	73.17
CDY68560	Canola	plastid	74.21	72.92
CDY69114	Canola	plastid	69.29	72.73
CDX69370	Canola	plastid	68.9	72.46
VIT_00s0591g00020.t01	Wine grape	plastid	15.55	52.32

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	GO:A0A078BW08	InterPro:Aldolase_TIM	EnsemblPlants:CDX68985
ProteinID:CDX68985	ProteinID:CDX68985.1	InterPro:DAHP_synth_2	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016740
EnsemblPlantsGene:GSBRNA2T00130734001	InterPro:IPR013785	PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	MetaCyc:PWY-6164
SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniPathway:UPA00053	UniParc:UPI0004EB6436	SEG:seg	:

Description

BnaC01g04680D

Coordinates

chrLK031789:+:2296891..2299709

Molecular Weight (calculated)

56596.9 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.349

Length

508 amino acids

Sequence
(BLAST)

001: MMTTLNVSSP LPTKSFLPHR PPPRRQISFG PVFAVHSTDP KKSPESFSRP AKWSLDSWKS MKALQLPEYP DQKDLDSVLE TLSSYPPIVF AGEARKLEEK
101: LGQAAMGQAF MLQGGDCAES FKEFNADNIR DTFRVLLQMG VVLMFGGQMP IIKVGRMAGQ FAKPRSDPFE EKNGVKLPSY RGDNINGDAF DEKSRIPDPH
201: RMIRAYTQSV GTLNLLRAFA TGGYAAMERV SQWNLDFSQH SEQGDRYREL ANRVDEALGF MGAAGLTNAH PIMTTTEFWT SHECLLLPYE QALTREDSTS
301: GLYYDCSAHM VWVGERTRQL DGAHVEFLRG ISNPLGIKVS DKMVPSELVK LIEILNPQNK PGRITVIVRM GAENMRVKLP HLIRAVRGAG QIVTWVSDPM
401: HGNTIMAPSG LKTRSFDAIR AELRAFFDVH DQEGSFPGGV HLEMTGQNVT ECVGGSRTIT YNDLSSRYHT HCDPRLNASQ SLELAFIIAE RLRKRRLGSG
501: SLLSSIGF

Best Arabidopsis Sequence Match ( AT4G33510.1 )
(BLAST)

001: MVTLNASSPL TTKSFLPYRH APRRPISFSP VFAVHSTDPK KSTQSASASV KWSLESWKSK KALQLPDYPD QKDVDSVLQT LSSFPPIVFA GEARKLEDKL
101: GQAAMGQAFM LQGGDCAESF KEFNANNIRD TFRVLLQMGV VLMFGGQLPV IKVGRMAGQF AKPRSDPFEE KDGVKLPSYR GDNINGDAFD EKSRIPDPHR
201: MVRAYTQSVA TLNLLRAFAT GGYAAMQRVS QWNLDFTQHS EQGDRYRELA NRVDEALGFM GAAGLTSAHP IMTTTEFWTS HECLLLPYEQ ALTREDSTSG
301: LYYDCSAHML WVGERTRQLD GAHVEFLRGI ANPLGIKVSD KMVPSELVKL IEILNPQNKP GRITVIVRMG AENMRVKLPN LIRAVRGAGQ IVTWVSDPMH
401: GNTIMAPGGL KTRSFDAIRA ELRAFFDVHD QEGSFPGGVH LEMTGQNVTE CVGGSRTITY NDLSSRYHTH CDPRLNASQS LELAFIIAER LRKRRLGSGN
501: LPSSIGV

Arabidopsis Description

DHS2Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178US70]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.