Factsheet for VIT_00s0591g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33510.1	VIT_06s0004g02230.t01	AT1G51355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1217g00010.t01	Wine grape	plastid	99.34	29.76
CDX75362	Canola	plastid	53.64	15.94
VIT_18s0001g06250.t01	Wine grape	plastid	57.62	15.88
VIT_00s0391g00070.t01	Wine grape	plastid	55.63	15.79
Bra011449.1-P	Field mustard	cytosol	46.36	15.62
AT4G33510.1	Thale cress	plastid	52.32	15.58
CDX68985	Canola	plastid	52.32	15.55
PGSC0003DMT400032681	Potato	plastid	54.3	15.53
Solyc01g105420.2.1	Tomato	plastid	0.0	0.0

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:50.2.5	InterPro:Aldolase_TIM	ProteinID:CCB50166	ProteinID:CCB50166.1
InterPro:DAHP_synth_2	UniProt:F6HD71	EMBL:FN595553	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	InterPro:IPR013785	PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF14
SUPFAM:SSF51569	UniParc:UPI000210A701	ArrayExpress:VIT_00s0591g00020	EnsemblPlantsGene:VIT_00s0591g00020	EnsemblPlants:VIT_00s0591g00020.t01	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:F6HD71]

Coordinates

chrUn:+:32489881..32490409

Molecular Weight (calculated)

16448.9 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.118

Length

151 amino acids

Sequence
(BLAST)

001: MAVTGTANLA APTPPSLCRL FPNPRYLPTH PLKPRPISAS LSSIDIRSPN WTPGSWKSKK AQQLPEYPDP VELESVLKTL ESFPPMVFAG EARNLEERLA
101: DAAVGKAFLL QGGDCAESFK EFGGTNIRDT FRVLLQMGIV LTFGAQLPVI K

Best Arabidopsis Sequence Match ( AT4G39980.1 )
(BLAST)

001: MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS VKESVASSSS GALKWTPESW KLKKALQLPD YPNANELESV
101: LKTIEAFPPI VFAGEARNLE ERLADAAVGK AFLLQGGDCA ESFKEFNATN IRDTFRVLLQ MSIVLTFGGQ VPVIKVGRMA GQFAKPRSDA FEEKDGVKLP
201: SYKGDNINGD TFDEKSRIPD PNRMIRAYTQ SAATLNLLRA FATGGYAAIQ RVTQWNLDFV EQSEQADRYQ ELANRVDEAL GFMSACGLGT DHPLMTTTDF
301: YTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMVWCGERTR QLDGAHVEFL RGIANPLGIK VSNKMDPFEL VKLVEILNPN NKPGRITVIV RMGAENMRVK
401: LPHLIRAVRR SGQIVTWVCD PMHGNTIKAP CGLKTRAFDS ILAEVRAFLD VHEQEGSHAG GIHLEMTGQN VTECIGGSRT VTYDDLSSRY HTHCDPRLNA
501: SQSLELAFIV AERLRKRRTG SQRVS

Arabidopsis Description

DHS1Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P29976]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.