Factsheet for VIT_18s0001g06250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16768	Soybean	endoplasmic reticulum, plastid	78.28	84.28
KRH72380	Soybean	endoplasmic reticulum	80.66	83.08
VIT_00s0391g00070.t01	Wine grape	plastid	79.56	81.95
PGSC0003DMT400079161	Potato	plastid	80.11	81.15
Solyc04g074480.2.1	Tomato	plastid	79.93	80.96
KRH53034	Soybean	plastid	71.72	76.16
VIT_00s1217g00010.t01	Wine grape	plastid	68.8	74.8
VIT_00s0591g00020.t01	Wine grape	plastid	15.88	57.62

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:100233115	wikigene:100233115	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	ProteinID:AAN77866
ProteinID:AAN77866.1	ProteinID:ACY29660	ProteinID:ACY29660.1	EMBL:AY150519	InterPro:Aldolase_TIM	ProteinID:CCB45594
ProteinID:CCB45594.1	InterPro:DAHP_synth_2	UniProt:F6H0X2	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	EMBL:GU060644	InterPro:IPR013785	EntrezGene:LOC100233115
wikigene:LOC100233115	PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	SUPFAM:SSF51569	TIGR:TC51974
TIGR:TC54321	TIGRFAMs:TIGR01358	UniParc:UPI00015C7D8B	ArrayExpress:VIT_18s0001g06250	EnsemblPlantsGene:VIT_18s0001g06250	EnsemblPlants:VIT_18s0001g06250.t01
unigene:Vvi.688	SEG:seg	:	:	:	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:F6H0X2]

Coordinates

chr18:+:4700787..4704775

Molecular Weight (calculated)

60173.7 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.315

Length

548 amino acids

Sequence
(BLAST)

001: MALAGTSIIP TNSNSFLQTQ ALPSSTSKSH QPYLLTNPTK SASFRPISAV HSADPSKNPV VSDKSPKAPA AAASSAATTA STTKVSGAVP GKWSIESWKS
101: KKALQLPEYP DPEDLESVLR TLEAFPPIVF AGEARSLEER LAEAAMGNAF LLQGGDCAES FKEFNANNIR DTFRILLQMG AVLMFGGQVP VIKVGRMAGQ
201: FAKPRSESFE EKNGVKLPSY RGDNVNGDAF DVKSRTPDPQ RMIRAYCQAA ATLNLLRAFA TGGYASMQRV TQWNLDFTEH SEQGDRYREL AHRVDEALGF
301: MAAAGLTVDH PIMTTTEFWT SHECLLLPFE QSLTREDSTS GLYYDCSAHM LWVGERTRQL DGAHVEFLRG VANPLGIKVS DKMDPNELVK LIEILNPQNK
401: AGRITVITRM GAENMRVKLP HLIRAIRRAG QIVTWVSDPM HGNTIKAPCG LKTRPFDAIR AEVRAFFDVH EQEGSHPGGV HLEMTGQNVT ECIGGSRTVT
501: FDDLSSRYHT HCDPRLNASQ SLELAFIIAE RLRKRRIGSQ LSLNTMGL

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.