Factsheet for PGSC0003DMT400079161

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074480.2.1	Tomato	plastid	97.6	97.6
KRH16768	Soybean	endoplasmic reticulum, plastid	76.53	81.34
KRH72380	Soybean	endoplasmic reticulum	79.48	80.83
VIT_18s0001g06250.t01	Wine grape	plastid	81.15	80.11
PGSC0003DMT400041818	Potato	plastid	73.01	77.3
PGSC0003DMT400041816	Potato	plastid	69.87	75.6
KRH53034	Soybean	plastid	71.72	75.19
PGSC0003DMT400032681	Potato	plastid	72.09	73.86

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:102577618	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	ProteinID:AAA33810	ProteinID:AAA33810.1
EMBL:AB061254	InterPro:Aldolase_TIM	ProteinID:BAC23040	ProteinID:BAC23040.1	InterPro:DAHP_synth_2	GO:GO:0003674
GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	InterPro:IPR013785
EMBL:J05191	UniProt:M1D1C6	PFAM:PF01474	EnsemblPlantsGene:PGSC0003DMG400030812	PGSC:PGSC0003DMG400030812	EnsemblPlants:PGSC0003DMT400079161
PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniParc:UPI00029698FE	RefSeq:XP_006363279.1
SEG:seg	:	:	:	:	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400030812]

Coordinates

chr4:+:63992012..63995560

Molecular Weight (calculated)

59877.4 Da

IEP (calculated)

8.816

GRAVY (calculated)

-0.375

Length

541 amino acids

Sequence
(BLAST)

001: MALSSTSTTN SLLSNKSLVQ NQPLLPSPLK NAFFSNNSTK TIRFVQPISA VHSSDSNKNP IVSDKPSKSS PPAATATTAP APAVTKTEWA VDSWKSKKAL
101: QLPEYPNQEE LRSVLKTIDE FPPIVFAGEA RSLEERLGEA AMGRAFLLQG GDCAESFKEF NANNIRDTFR ILLQMGAVLM FGGQMPVIKV GRMAGQFAKP
201: RSDSFEEKDG VKLPSYRGDN VNGDAFDVKS RTPDPQRLIR AYCQSAATLN LLRAFATGGY AAMQRINQWN LDFTEHSEQG DRYRELASRV DEALGFMTAA
301: GLTMDHPIMK TTEFWTSHEC LLLPYEQSLT RRDSTSGLYY DCSAHFLWVG ERTRQLDGAH VEFLRGIANP LGIKVSDKMD PSALVKLIEI LNPQNKAGRI
401: TIITRMGAEN MRVKLPHLIR AVRSAGQIVT WVSDPMHGNT IKAPCGLKTR PFDSIRAEVR AFFDVHDQEG SHPGGVHLEM TGQNVTECIG GSRTVTFDDL
501: SSRYHTHCDP RLNASQSLEL SFIIAERLRK RRLGSQSVLG Q

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.