CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16768	Soybean	endoplasmic reticulum, plastid	92.11	96.27
VIT_00s0391g00070.t01	Wine grape	plastid	81.2	81.2
GSMUA_AchrUn_...	Banana	cytosol	26.88	80.79
VIT_18s0001g06250.t01	Wine grape	plastid	83.08	80.66
PGSC0003DMT400079161	Potato	plastid	80.83	79.48
Solyc11g009080.1.1	Tomato	plastid	75.94	79.06
Solyc04g074480.2.1	Tomato	plastid	80.26	78.93
PGSC0003DMT400041818	Potato	plastid	75.56	78.67
PGSC0003DMT400041816	Potato	plastid	72.93	77.6
Bra011819.1-P	Field mustard	plastid	75.0	77.03
AT4G39980.1	Thale cress	plastid	75.56	76.57
KRH53034	Soybean	plastid	74.25	76.55
CDY69114	Canola	plastid	69.17	76.03
CDX69370	Canola	plastid	68.42	75.36
KRH10562	Soybean	nucleus, plastid	15.23	16.36

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:100797019	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	EMBL:ACUP02001204	InterPro:Aldolase_TIM
InterPro:DAHP_synth_2	EnsemblPlantsGene:GLYMA_02G208400	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	UniProt:I1JGU8	InterPro:IPR013785	EnsemblPlants:KRH72380	ProteinID:KRH72380	ProteinID:KRH72380.1
PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	MetaCyc:PWY-6164	SUPFAM:SSF51569	TIGRFAMs:TIGR01358
UniParc:UPI0002337567	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:39341234..39345801

Molecular Weight (calculated)

59013.8 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.355

Length

532 amino acids

Sequence
(BLAST)

001: MAISSTSNSL IPTKSLIPQS HPLIPNTRPA LRPKPGPSPS IFAVHAAEPA KNPVVTDKPK PQAQQPPPAS ARATKWAVDS WKSKKALQLP EYPSQEELES
101: VLKTLEAFPP IVFAGEARTL EEHLAEAAMG NAFLLQGGDC AESFKEFNAN NIRDTFRIIL QMSVVMMFGG QMPVIKVGRM AGQFAKPRSD SFEEKNGVKL
201: PSYRGDNING DSFDEKSRIP DPQRMIRAYC QAAATLNLLR AFATGGYAAM QRVTQWNLDF TDHSEQGDRY RELANRVDEA LGFMAAAGLT VDHPIMRTTE
301: FWTSHECLLL PYEQSLTRLD STSGLYYDCS AHMIWVGERT RQLDGAHVEF LRGVANPLGI KVSDKMDPNE LVKLIEILNP QNKAGRITVI TRMGAENMRV
401: KLPHLIRAVR RAGQIVTWVS DPMHGNTIKA PCGLKTRPFD SIRAEVRAFF DVHEQEGSHP GGVHLEMTGQ NVTECIGGSR TVTFDDLSSR YHTHCDPRLN
501: ASQSLELAFI IAERLRKSRI RSQQPLAPLG VL

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.