CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72380	Soybean	endoplasmic reticulum	96.27	92.11
GSMUA_AchrUn_...	Banana	cytosol	28.09	80.79
VIT_00s0391g00070.t01	Wine grape	plastid	82.51	78.95
VIT_18s0001g06250.t01	Wine grape	plastid	84.28	78.28
Solyc11g009080.1.1	Tomato	plastid	77.8	77.5
PGSC0003DMT400041818	Potato	plastid	77.41	77.1
PGSC0003DMT400041816	Potato	plastid	75.25	76.6
PGSC0003DMT400079161	Potato	plastid	81.34	76.53
Solyc04g074480.2.1	Tomato	plastid	80.55	75.79
KRH53034	Soybean	plastid	76.62	75.58
Bra011819.1-P	Field mustard	plastid	76.03	74.71
AT4G39980.1	Thale cress	plastid	76.62	74.29
CDY69114	Canola	plastid	69.94	73.55
CDX69370	Canola	plastid	69.16	72.88
KRH10562	Soybean	nucleus, plastid	15.32	15.76

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	EMBL:ACUP02009011	EMBL:ACUP02009012	InterPro:Aldolase_TIM
InterPro:DAHP_synth_2	EnsemblPlantsGene:GLYMA_14G176600	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	InterPro:IPR013785	UniProt:K7M7P5	EnsemblPlants:KRH16768	ProteinID:KRH16768	ProteinID:KRH16768.1
PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	MetaCyc:PWY-6164	SUPFAM:SSF51569	TIGRFAMs:TIGR01358
UniParc:UPI000294C772	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:43565478..43570243

Molecular Weight (calculated)

56519.9 Da

IEP (calculated)

7.884

GRAVY (calculated)

-0.321

Length

509 amino acids

Sequence
(BLAST)

001: MSISSTSNSL IPPKSLIPQS HPLIPNIRPG LRPKPGPSPS ILAVHAAEPA KMVWGVDSGK SKKALQLPEY PNQEDLEAVL RTLDASPPIV FAGEARTLEE
101: HLAEAAMGNA FLLQGGDCAE SFKEFNANNI RDTFRIILQM SVVMMFGGQM PVIKVGRMAG QFAKPRSDSF EEKNGVKLPS YRGDNINGDS FDEKSRIPDP
201: QRMIRAYCQA AATLNLLRAF ATGGYAAMQR VTQWNLDFTD HSEQGDRYRE LANRVDEALG FMAAAGLTVD HPIMRTTEFW TSHECLLLPY EQSLTRLDST
301: SGLYYDCSAH MLWVGERTRQ LDGAHVEFLR GVANPLGIKV SDKMDPNELV RLIEILNPQN KPGRITVITR MGAENMRVKL PHLIRAVRRA GQIVTWVSDP
401: MHGNTIKAPC GLKTRPFDFI RAEVRAFFDV HEQEGSHPGG VHLEMTGQNV TECIGGSRTV TFDDLSSRYH THCDPRLNAS QSLELAFIIA ERLRKSRIRS
501: QQPLAPLGV

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.