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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079161 Potato plastid 97.6 97.6
Solyc01g105420.2.1 Tomato plastid 25.51 85.71
KRH16768 Soybean endoplasmic reticulum, plastid 75.79 80.55
KRH72380 Soybean endoplasmic reticulum 78.93 80.26
VIT_18s0001g06250.t01 Wine grape plastid 80.96 79.93
Solyc11g009080.1.1 Tomato plastid 73.2 77.5
KRH53034 Soybean plastid 71.53 75.0
Solyc01g105390.2.1 Tomato cytosol 24.21 68.95
Protein Annotations
KEGG:00400+2.5.1.54Gene3D:3.20.20.70MapMan:4.1.5.1.1InterPro:Aldolase_TIMInterPro:DAHP_synth_2GO:GO:0003674
GO:GO:0003824GO:GO:0003849GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0008150GO:GO:0008152GO:GO:0008652GO:GO:0009058GO:GO:0009073GO:GO:0009423
GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016020GO:GO:0016740InterPro:IPR013785
UniProt:K4BTY6PFAM:PF01474PANTHER:PTHR21337PANTHER:PTHR21337:SF16SUPFAM:SSF51569EnsemblPlantsGene:Solyc04g074480.2
EnsemblPlants:Solyc04g074480.2.1TIGRFAMs:TIGR01358UniParc:UPI0002765641SEG:seg::
Description
Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:K4BTY6]
Coordinates
chr4:+:60468402..60472033
Molecular Weight (calculated)
59926.4 Da
IEP (calculated)
8.998
GRAVY (calculated)
-0.404
Length
541 amino acids
Sequence
(BLAST)
001: MALSTNTTTN SLLSNKSLLQ NQPLLSSPSK NAFFSNKSTK TVRFVQPIAA VHSSDSNKNP IVSDKPSKSS PPAATATTAP APAVTKTEWA VDSWKSKKAL
101: QLPEYPDQEE LRSVLKTIDE FPPIVFAGEA RSLEERLGEA AMGRAFLLQG GDCAESFKEF NANNIRDTFR ILLQMGAVLM FGGQMPVIKV GRMAGQFAKP
201: RSDSFEEKDG VKLPSYRGDN VNGDAFDVKS RTPDPQRLIR AYCQSAATLN LLRAFATGGY AAMQRINQWN LDFTEHSEQG DRYRELASRV DEALGFMTAA
301: GLTMDHPIMK TTEFWTSHEC LLLPYEQSLT RRDSTSGLHY DCSAHFLWVG ERTRQLDGAH VEFLRGIANP LGIKVSDKMD PSALVKLIEI LNPQNKAGRI
401: TIITRMGAEN MRVKLPHLIR AVRRAGQIVT WVSDPMHGNT IKAPCGLKTR PFDSIRAEVR AFFDVHDQEG SHPGGVHLEM TGQNVTECIG GSRTVTFDDL
501: SSRYHTHCDP RLNASQSLEL SFIIAERLRK RRLGSQSTLG Q
Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)
001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL
Arabidopsis Description
Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.