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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 22908117
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400041818 Potato plastid 97.85 97.85
Solyc01g105420.2.1 Tomato plastid 25.44 80.75
GSMUA_AchrUn_... Banana cytosol 27.59 79.66
VIT_00s0391g00070.t01 Wine grape plastid 81.8 78.57
KRH16768 Soybean endoplasmic reticulum, plastid 77.5 77.8
Bra011819.1-P Field mustard plastid 78.47 77.41
CDY69114 Canola plastid 72.6 76.65
CDX69370 Canola plastid 72.21 76.4
AT4G39980.1 Thale cress plastid 78.47 76.38
KRH72380 Soybean endoplasmic reticulum 79.06 75.94
Solyc04g074480.2.1 Tomato plastid 77.5 73.2
KRH53034 Soybean plastid 72.8 72.09
Solyc01g105390.2.1 Tomato cytosol 25.05 67.37
Protein Annotations
KEGG:00400+2.5.1.54Gene3D:3.20.20.70MapMan:4.1.5.1.1InterPro:Aldolase_TIMInterPro:DAHP_synth_2GO:GO:0003674
GO:GO:0003824GO:GO:0003849GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0008652GO:GO:0009058
GO:GO:0009073GO:GO:0009423GO:GO:0009507GO:GO:0009536GO:GO:0009611GO:GO:0009987
GO:GO:0016740InterPro:IPR013785UniProt:K4D5G8PFAM:PF01474PANTHER:PTHR21337PANTHER:PTHR21337:SF16
SUPFAM:SSF51569EnsemblPlantsGene:Solyc11g009080.1EnsemblPlants:Solyc11g009080.1.1TIGRFAMs:TIGR01358UniParc:UPI0002769381SEG:seg
Description
Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G39980) UniProtKB/Swiss-Prot;Acc:P29976]
Coordinates
chr11:+:3200299..3203598
Molecular Weight (calculated)
56933.3 Da
IEP (calculated)
7.908
GRAVY (calculated)
-0.335
Length
511 amino acids
Sequence
(BLAST)
001: MALSNTLSLS SSKSLVQSHL LHNPTPQPRF SLFPTTQHGR RHPISAVHAA EPSKTAVKQG KWSLDSWKTK KALQLPEYPD EKELESVLKT LEMNPPLVFA
101: GEARSLEEKL GEAALGKAFL LQGGDCAESF KEFNANNIRD TFRILLQMSV VLMFGGQVPV IKVGRMAGQF AKPRSDPFEE INGVKLPSYK GDNINGDTFD
201: EKSRIPDPHR LIRAYMQSAA TLNLLRAFAT GGYAAMQRVT EWNLDFVENS EQGDRYQELA HRVDEALGFM AAAGLTVDHP IMSTTDFWTS HECLLLPYEQ
301: ALTREDSTSG LFYDCSAHMV WVGERTRQLD GAHVEFLRGV ANPLGIKVSQ KMDPKELIKL IDILNPANKP GRITVIVRMG AENMRVKLSH LVRAVRGAGQ
401: IVTWVCDPMH GNTIKAPCGL KTRAFDSILA EVRAFFDVHE QEGSHPGGIH LEMTGQNVTE CIGGSRTVTY DDLGSRYHTH CDPRLNASQS LELSFIVAER
501: LRRRRMSSQR L
Best Arabidopsis Sequence Match ( AT4G39980.1 )
(BLAST)
001: MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS VKESVASSSS GALKWTPESW KLKKALQLPD YPNANELESV
101: LKTIEAFPPI VFAGEARNLE ERLADAAVGK AFLLQGGDCA ESFKEFNATN IRDTFRVLLQ MSIVLTFGGQ VPVIKVGRMA GQFAKPRSDA FEEKDGVKLP
201: SYKGDNINGD TFDEKSRIPD PNRMIRAYTQ SAATLNLLRA FATGGYAAIQ RVTQWNLDFV EQSEQADRYQ ELANRVDEAL GFMSACGLGT DHPLMTTTDF
301: YTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMVWCGERTR QLDGAHVEFL RGIANPLGIK VSNKMDPFEL VKLVEILNPN NKPGRITVIV RMGAENMRVK
401: LPHLIRAVRR SGQIVTWVCD PMHGNTIKAP CGLKTRAFDS ILAEVRAFLD VHEQEGSHAG GIHLEMTGQN VTECIGGSRT VTYDDLSSRY HTHCDPRLNA
501: SQSLELAFIV AERLRKRRTG SQRVS
Arabidopsis Description
DHS1Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P29976]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.