Factsheet for Solyc01g105420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105390.2.1	Tomato	cytosol	88.2	74.74
Bra011449.1-P	Field mustard	cytosol	86.34	31.03
PGSC0003DMT400032681	Potato	plastid	96.89	29.55
CDX68985	Canola	plastid	89.44	28.35
AT4G33510.1	Thale cress	plastid	88.2	28.01
CDX75362	Canola	plastid	86.96	27.56
Solyc04g074480.2.1	Tomato	plastid	85.71	25.51
Solyc11g009080.1.1	Tomato	plastid	80.75	25.44
VIT_00s1217g00010.t01	Wine grape	plastid	79.5	25.4
VIT_00s0591g00020.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	InterPro:Aldolase_TIM	InterPro:DAHP_synth_2	GO:GO:0003674
GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423
GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016740
InterPro:IPR013785	UniProt:K4B2B2	PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	SUPFAM:SSF51569
EnsemblPlantsGene:Solyc01g105420.2	EnsemblPlants:Solyc01g105420.2.1	UniParc:UPI0002768F83	:	:	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:K4B2B2]

Coordinates

chr1:-:93591394..93592480

Molecular Weight (calculated)

17996.7 Da

IEP (calculated)

9.982

GRAVY (calculated)

-0.371

Length

161 amino acids

Sequence
(BLAST)

001: MDPNELVKLI DILNPQNRPG RITVIARMGA DNMRVKLPHL IRAIRGAGQI VTWVSDPMHG NTTKAPCGLK TRSFDSIRAE VRAFFDVHDQ EGSYPGGVHL
101: EMTGQNVTEC VGGSRTITYN DLSSRYHTHC DPRLNASQAL ELAFIIAERL RKRRLGPKFG F

Best Arabidopsis Sequence Match ( AT4G33510.1 )
(BLAST)

001: MVTLNASSPL TTKSFLPYRH APRRPISFSP VFAVHSTDPK KSTQSASASV KWSLESWKSK KALQLPDYPD QKDVDSVLQT LSSFPPIVFA GEARKLEDKL
101: GQAAMGQAFM LQGGDCAESF KEFNANNIRD TFRVLLQMGV VLMFGGQLPV IKVGRMAGQF AKPRSDPFEE KDGVKLPSYR GDNINGDAFD EKSRIPDPHR
201: MVRAYTQSVA TLNLLRAFAT GGYAAMQRVS QWNLDFTQHS EQGDRYRELA NRVDEALGFM GAAGLTSAHP IMTTTEFWTS HECLLLPYEQ ALTREDSTSG
301: LYYDCSAHML WVGERTRQLD GAHVEFLRGI ANPLGIKVSD KMVPSELVKL IEILNPQNKP GRITVIVRMG AENMRVKLPN LIRAVRGAGQ IVTWVSDPMH
401: GNTIMAPGGL KTRSFDAIRA ELRAFFDVHD QEGSFPGGVH LEMTGQNVTE CVGGSRTITY NDLSSRYHTH CDPRLNASQS LELAFIIAER LRKRRLGSGN
501: LPSSIGV

Arabidopsis Description

DHS2Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178US70]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.