Factsheet for Bra011449.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014270.1-P
Bra018904.1-P
Bra030445.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33510.1	Bra014270.1-P	AT1G51355.1	21798944
AT4G33510.1	Bra018904.1-P	AT1G51355.1	21798944
AT4G33510.1	Bra030445.1-P	AT1G51355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75362	Canola	plastid	98.44	86.81
Solyc01g105420.2.1	Tomato	plastid	31.03	86.34
CDX68985	Canola	plastid	96.21	84.84
AT4G33510.1	Thale cress	plastid	93.53	82.64
PGSC0003DMT400032681	Potato	plastid	85.49	72.54
VIT_00s1217g00010.t01	Wine grape	plastid	80.13	71.23
Bra016381.1-P	Field mustard	plastid	81.7	70.79
Bra031389.1-P	Field mustard	plastid	81.47	70.46
Bra011819.1-P	Field mustard	plastid	80.8	69.88
Bra035024.1-P	Field mustard	cytosol	83.48	50.4
VIT_00s0591g00020.t01	Wine grape	plastid	15.62	46.36

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	InterPro:Aldolase_TIM	EnsemblPlantsGene:Bra011449	EnsemblPlants:Bra011449.1
EnsemblPlants:Bra011449.1-P	InterPro:DAHP_synth_2	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013785	UniProt:M4D4P5	PFAM:PF01474
PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniParc:UPI0002545CAA	SEG:seg

Description

AT4G33510 (E=2e-242) DHS2 | DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase); 3-deoxy-7-phosphoheptulonate synthase

Coordinates

chrA01:-:2123601..2126234

Molecular Weight (calculated)

49832.7 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.307

Length

448 amino acids

Sequence
(BLAST)

001: MKALQLPEYP DQKDLDSVLK TLSSYPPIVF AGEARKLEEK LGQAAMGQAF MLQGGDCAES FKEFNADNIR DTFRVLLQMG VVLMFGGQMP VIKVGRMAGQ
101: FAKPRSDPFE EKNGVKLPSY RGDNINGDAF DEKSRIPDPH RMVRAYTQSV GTLNLLRAFA TGGYAAMERV SEWNLDFSQH SEQGDRYREL ANRVDEALGF
201: MDAAGLTNAH PIMTTTEFWT SHECLLLPYE QVLTREDSTS GLYYDCSAHM VWVGERTRQL DGAHVEFLRG IANPLGIKAS DKMVPSELVE LIEILNPQNK
301: PGRITVIVRM GAENMRVKLP HLIRAVRGAG QIVTWVSDPM HGNTIMAPSG LKTRSFDAIR AELRAFFDVH DQEGSFPGGV HLEMTGQNVT ECVGGSRTIT
401: YNDLSSRYHT HCDPRLNASQ SLELAFVIAE RLRKRRLSSG SLLSSIGL

Best Arabidopsis Sequence Match ( AT4G33510.1 )
(BLAST)

001: MVTLNASSPL TTKSFLPYRH APRRPISFSP VFAVHSTDPK KSTQSASASV KWSLESWKSK KALQLPDYPD QKDVDSVLQT LSSFPPIVFA GEARKLEDKL
101: GQAAMGQAFM LQGGDCAESF KEFNANNIRD TFRVLLQMGV VLMFGGQLPV IKVGRMAGQF AKPRSDPFEE KDGVKLPSYR GDNINGDAFD EKSRIPDPHR
201: MVRAYTQSVA TLNLLRAFAT GGYAAMQRVS QWNLDFTQHS EQGDRYRELA NRVDEALGFM GAAGLTSAHP IMTTTEFWTS HECLLLPYEQ ALTREDSTSG
301: LYYDCSAHML WVGERTRQLD GAHVEFLRGI ANPLGIKVSD KMVPSELVKL IEILNPQNKP GRITVIVRMG AENMRVKLPN LIRAVRGAGQ IVTWVSDPMH
401: GNTIMAPGGL KTRSFDAIRA ELRAFFDVHD QEGSFPGGVH LEMTGQNVTE CVGGSRTITY NDLSSRYHTH CDPRLNASQS LELAFIIAER LRKRRLGSGN
501: LPSSIGV

Arabidopsis Description

DHS2Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178US70]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.