Factsheet for PGSC0003DMT400032681

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019013

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33510.1	PGSC0003DMT400019013	AT1G51355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105420.2.1	Tomato	plastid	29.55	96.89
Bra011449.1-P	Field mustard	cytosol	72.54	85.49
AT4G33510.1	Thale cress	plastid	76.33	79.49
CDX68985	Canola	plastid	75.95	78.94
CDX75362	Canola	plastid	75.38	78.35
PGSC0003DMT400041816	Potato	plastid	72.54	76.6
PGSC0003DMT400041818	Potato	plastid	74.05	76.52
VIT_00s1217g00010.t01	Wine grape	plastid	69.89	73.21
PGSC0003DMT400079161	Potato	plastid	73.86	72.09
VIT_00s0591g00020.t01	Wine grape	plastid	15.53	54.3

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:102603629	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	InterPro:Aldolase_TIM	InterPro:DAHP_synth_2
GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009423	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0016740	InterPro:IPR013785	UniProt:M1AXT4	PFAM:PF01474	EnsemblPlantsGene:PGSC0003DMG400012549	PGSC:PGSC0003DMG400012549
EnsemblPlants:PGSC0003DMT400032681	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniParc:UPI00029483A0
RefSeq:XP_006351762.1	:	:	:	:	:

Description

2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400012549]

Coordinates

chr1:-:82060345..82064332

Molecular Weight (calculated)

58390.8 Da

IEP (calculated)

8.951

GRAVY (calculated)

-0.400

Length

528 amino acids

Sequence
(BLAST)

001: MALAAATGGG NRGGSALPNS CLQAPKSSPL QKPIFFSSFP KITTPSNSKI KPRIKPISAV QSPPSTTAKT AQNPEGKWSL ESWKSKPASQ LPEYPDKVKL
101: ESVLDTLSTY PPIVFAGEAR NLEEKLGEAA LGNAFLLQGG DCAESFKEFS ANNIRDTFRV ILQMGVVLMF GGQMPVIKVG RMAGQFAKPR SDPFEEKDGV
201: KLPSYRGDNV NGDTFDEKSR IPDPHRMIRA YTQSVATLNL LRAFATGGYA AMQRVNEWNL DFTDRSEQGD RYRELAHRVD ETMGFMTAAG LTVDHPIMTT
301: TDFWTSHECL LLPYEQALTR EDSTSGLYYD CSAHMIWVGE RTRQLDGAHV EFLRGIANPL GIKVSHKMDP NELVKLIDIL NPQNRPGRIT VIARMGADNM
401: RVKLPHLIRA VRGAGQIVTW VSDPMHGNTT KAPCGLKTRS FDSIRAEVRA FFDVHDQEGS YPGGVHLEMT GQNVTECVGG SRTITYNDLS SRYHTHCDPR
501: LNASQALELA FIIAERLRKR RLGPKFGF

Best Arabidopsis Sequence Match ( AT4G33510.1 )
(BLAST)

001: MVTLNASSPL TTKSFLPYRH APRRPISFSP VFAVHSTDPK KSTQSASASV KWSLESWKSK KALQLPDYPD QKDVDSVLQT LSSFPPIVFA GEARKLEDKL
101: GQAAMGQAFM LQGGDCAESF KEFNANNIRD TFRVLLQMGV VLMFGGQLPV IKVGRMAGQF AKPRSDPFEE KDGVKLPSYR GDNINGDAFD EKSRIPDPHR
201: MVRAYTQSVA TLNLLRAFAT GGYAAMQRVS QWNLDFTQHS EQGDRYRELA NRVDEALGFM GAAGLTSAHP IMTTTEFWTS HECLLLPYEQ ALTREDSTSG
301: LYYDCSAHML WVGERTRQLD GAHVEFLRGI ANPLGIKVSD KMVPSELVKL IEILNPQNKP GRITVIVRMG AENMRVKLPN LIRAVRGAGQ IVTWVSDPMH
401: GNTIMAPGGL KTRSFDAIRA ELRAFFDVHD QEGSFPGGVH LEMTGQNVTE CVGGSRTITY NDLSSRYHTH CDPRLNASQS LELAFIIAER LRKRRLGSGN
501: LPSSIGV

Arabidopsis Description

DHS2Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178US70]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.