Factsheet for PGSC0003DMT400041818

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g009080.1.1	Tomato	plastid	97.85	97.85
PGSC0003DMT400041816	Potato	plastid	89.04	91.0
GSMUA_AchrUn_...	Banana	cytosol	27.4	79.1
VIT_00s0391g00070.t01	Wine grape	plastid	81.6	78.38
Bra011819.1-P	Field mustard	plastid	79.26	78.19
CDY69114	Canola	plastid	73.39	77.48
KRH16768	Soybean	endoplasmic reticulum, plastid	77.1	77.41
CDX69370	Canola	plastid	72.99	77.23
AT4G39980.1	Thale cress	plastid	78.86	76.76
KRH72380	Soybean	endoplasmic reticulum	78.67	75.56
PGSC0003DMT400032681	Potato	plastid	76.52	74.05
PGSC0003DMT400079161	Potato	plastid	77.3	73.01
KRH53034	Soybean	plastid	72.02	71.32

Protein Annotations

KEGG:00400+2.5.1.54	MapMan:4.1.5.1.1	ProteinID:AAA33840	ProteinID:AAA33840.1	InterPro:DAHP_synth_2	GO:GO:0003674
GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	UniProt:M1BC24	EMBL:M95201
PFAM:PF01474	EnsemblPlantsGene:PGSC0003DMG402016226	PGSC:PGSC0003DMG402016226	EnsemblPlants:PGSC0003DMT400041818	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16
SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniParc:UPI0002964AD6	SEG:seg	:	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG402016226]

Coordinates

chr11:-:2770456..2774221

Molecular Weight (calculated)

56877.2 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.317

Length

511 amino acids

Sequence
(BLAST)

001: MALSNTSSLS SSKSLVQSHL LHNPLPQPRF SLFPTTQHGR RHPISAVHAA EPSKTAVKQG KWSLDSWKTK KALQLPAYPD EKELESVLKT LEMNPPLVFA
101: GEARSLEEKL GEAALGKAFL LQGGDCAESF KEFNANNIRD TFRILLQMSV VLMFGGQVPV IKVGRMAGQF AKPRSDPFEE INGVKLPSYK GDNINGDTFD
201: EKSRIPDPHR LIRAYMQSAA TLNLLRAFAT GGYAAMQRVT EWNLDFVENC EQGDRYQELA HRVDEALGFM AAAGLTVDHP IMSTTDFWTS HECLLLPYEQ
301: ALTREDSTSG LFYDCSAHMV WVGERTRQLD GAHVEFLRGV ANPLGIKVSQ KMDPNELIKL IDILNPANKP GRITVIVRMG AENMRVKLSH LVRAVRGAGQ
401: IVTWVCDPMH GNTIKAPCGL KTRAFDSILA EVRAFFDVHE QEGSHPGGIH LEMTGQNVTE CIGGSRTVTY DDLGSRYHTH CDPRLNASQS LELSFIVAER
501: LRRRRMSTQR L

Best Arabidopsis Sequence Match ( AT4G39980.1 )
(BLAST)

001: MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS VKESVASSSS GALKWTPESW KLKKALQLPD YPNANELESV
101: LKTIEAFPPI VFAGEARNLE ERLADAAVGK AFLLQGGDCA ESFKEFNATN IRDTFRVLLQ MSIVLTFGGQ VPVIKVGRMA GQFAKPRSDA FEEKDGVKLP
201: SYKGDNINGD TFDEKSRIPD PNRMIRAYTQ SAATLNLLRA FATGGYAAIQ RVTQWNLDFV EQSEQADRYQ ELANRVDEAL GFMSACGLGT DHPLMTTTDF
301: YTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMVWCGERTR QLDGAHVEFL RGIANPLGIK VSNKMDPFEL VKLVEILNPN NKPGRITVIV RMGAENMRVK
401: LPHLIRAVRR SGQIVTWVCD PMHGNTIKAP CGLKTRAFDS ILAEVRAFLD VHEQEGSHAG GIHLEMTGQN VTECIGGSRT VTYDDLSSRY HTHCDPRLNA
501: SQSLELAFIV AERLRKRRTG SQRVS

Arabidopsis Description

DHS1Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P29976]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.