Factsheet for PGSC0003DMT400041816

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041818	Potato	plastid	91.0	89.04
GSMUA_AchrUn_...	Banana	cytosol	27.4	77.4
KRH16768	Soybean	endoplasmic reticulum, plastid	76.6	75.25
VIT_00s0391g00070.t01	Wine grape	plastid	79.6	74.81
Bra011819.1-P	Field mustard	plastid	77.4	74.71
AT4G39980.1	Thale cress	plastid	78.0	74.29
CDY69114	Canola	plastid	71.2	73.55
CDX69370	Canola	plastid	70.8	73.29
KRH72380	Soybean	endoplasmic reticulum	77.6	72.93
PGSC0003DMT400032681	Potato	plastid	76.6	72.54
PGSC0003DMT400079161	Potato	plastid	75.6	69.87
KRH53034	Soybean	plastid	72.0	69.77

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:102592476	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	InterPro:Aldolase_TIM	InterPro:DAHP_synth_2
GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009423	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013785
UniProt:M1BC23	PFAM:PF01474	EnsemblPlantsGene:PGSC0003DMG401016226	PGSC:PGSC0003DMG401016226	EnsemblPlants:PGSC0003DMT400041816	PANTHER:PTHR21337
PANTHER:PTHR21337:SF16	SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniParc:UPI000296A221	RefSeq:XP_006353220.1	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG401016226]

Coordinates

chr11:-:2777187..2780420

Molecular Weight (calculated)

55770.8 Da

IEP (calculated)

7.840

GRAVY (calculated)

-0.331

Length

500 amino acids

Sequence
(BLAST)

001: MALPNTFSLS ASKSLGNFSS CQPHFSLFPD HRYGRRHRIS AVHAAAEQEK WSLGSWKNKK ALQLPEYPNE ENLEIVLKIL ESNPPLVFAG EARNLEKKLG
101: EAALGKAFLL QGGDCAESFK EFNANNIRDT FRILLQMSVV LMFGGEVPVI KVGRMAGQFA KPRSDPFEEI NGVKLPSYKG DNINGDTFDE KSRIPDPRRL
201: IRAYMQSAAT LNLLRAFATG GYAAMQRVTE WNLDFVENSK QGDRYQELAH RVDEALGFMT AAGLTVDHPI MSTIDFWTSH ECLLLPYEQA LTREDSTSGL
301: FYDCSAHMVW VGERTRQLDG AHVEFLRGVA NPLGIKVSQK MDPNELIKLI DILNPANKPG RITVIARMGA ENTRVKLPPL VRAVRGAGQT VTWVCDPMHG
401: NTIKAPCGLK TRAFDTILAE VLAFFDVHEQ EGSHPGGIHL EMTGQNVTEC IGGSRTVTYD DLGSRYHTHC DPRLNASQSL ELSFNVAERL RRRRMATQRV

Best Arabidopsis Sequence Match ( AT4G39980.1 )
(BLAST)

001: MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS VKESVASSSS GALKWTPESW KLKKALQLPD YPNANELESV
101: LKTIEAFPPI VFAGEARNLE ERLADAAVGK AFLLQGGDCA ESFKEFNATN IRDTFRVLLQ MSIVLTFGGQ VPVIKVGRMA GQFAKPRSDA FEEKDGVKLP
201: SYKGDNINGD TFDEKSRIPD PNRMIRAYTQ SAATLNLLRA FATGGYAAIQ RVTQWNLDFV EQSEQADRYQ ELANRVDEAL GFMSACGLGT DHPLMTTTDF
301: YTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMVWCGERTR QLDGAHVEFL RGIANPLGIK VSNKMDPFEL VKLVEILNPN NKPGRITVIV RMGAENMRVK
401: LPHLIRAVRR SGQIVTWVCD PMHGNTIKAP CGLKTRAFDS ILAEVRAFLD VHEQEGSHAG GIHLEMTGQN VTECIGGSRT VTYDDLSSRY HTHCDPRLNA
501: SQSLELAFIV AERLRKRRTG SQRVS

Arabidopsis Description

DHS1Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P29976]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.