Factsheet for Bra011819.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69114	Canola	plastid	93.05	99.59
AT4G39980.1	Thale cress	plastid	90.73	89.52
Bra011449.1-P	Field mustard	cytosol	69.88	80.8
PGSC0003DMT400041818	Potato	plastid	78.19	79.26
Solyc11g009080.1.1	Tomato	plastid	77.41	78.47
PGSC0003DMT400041816	Potato	plastid	74.71	77.4
GSMUA_AchrUn_...	Banana	cytosol	26.25	76.84
VIT_00s0391g00070.t01	Wine grape	plastid	78.76	76.69
KRH16768	Soybean	endoplasmic reticulum, plastid	74.71	76.03
Bra031389.1-P	Field mustard	plastid	75.1	75.1
KRH72380	Soybean	endoplasmic reticulum	77.03	75.0
Bra016381.1-P	Field mustard	plastid	74.71	74.85
KRH53034	Soybean	plastid	70.27	70.54
Bra035024.1-P	Field mustard	cytosol	75.29	52.56

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	InterPro:Aldolase_TIM	EnsemblPlantsGene:Bra011819	EnsemblPlants:Bra011819.1
EnsemblPlants:Bra011819.1-P	InterPro:DAHP_synth_2	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507
GO:GO:0009536	GO:GO:0009611	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013785	UniProt:M4D5R2
PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	SUPFAM:SSF51569	TIGRFAMs:TIGR01358	UniParc:UPI0002546237
SEG:seg	:	:	:	:	:

Description

AT4G39980 (E=4e-263) DHS1 | DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase

Coordinates

chrA01:+:386233..388161

Molecular Weight (calculated)

57368.3 Da

IEP (calculated)

7.398

GRAVY (calculated)

-0.314

Length

518 amino acids

Sequence
(BLAST)

001: MALSNAASSS LSTRSLYTGL SHRHSHSNRQ SSIPFHRSVS LVTAPHAADP ARNAAVSVKE SVSCALEWTP ESWKLKKALQ LPDYPDAGEL DSVLKTIEAF
101: PPIVFAGEAR NLEERLADAA VGKAFLLQGG DCAESFKEFN ATNIRDTFRV LLQMSIVLTF GGQVPVIKVG RMAGQFAKPR SDPFEEKDGV KLPSYKGDNI
201: NGDTFDEKSR IPDPNRMIRA YTQSAATLNL LRAFATGGYA AIQRVTQWNL DFVEESEQAD RYQELANRVD EALGFMSACG LTTDHPLMTT TDFYTSHECL
301: LLPYEQSLTR LDSTSGLYYD CSAHMVWCGE RTRQLDGAHV EFLRGIANPL GIKVSNKMDP NELVKLVEIL NPNNKPGRIT VIVRMGAENM RVKLPHLIRA
401: VRRSGQIVTW VCDPMHGNTI KAPCGLKTRA FDSILAEVRA FLDVHEQEGS HAGGIHLEMT GQNVTECIGG SRTVTYDDLS SRYHTHCDPR LNASQSLELA
501: FIVAERLRKR RTATQRLS

Best Arabidopsis Sequence Match ( AT4G39980.1 )
(BLAST)

001: MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS VKESVASSSS GALKWTPESW KLKKALQLPD YPNANELESV
101: LKTIEAFPPI VFAGEARNLE ERLADAAVGK AFLLQGGDCA ESFKEFNATN IRDTFRVLLQ MSIVLTFGGQ VPVIKVGRMA GQFAKPRSDA FEEKDGVKLP
201: SYKGDNINGD TFDEKSRIPD PNRMIRAYTQ SAATLNLLRA FATGGYAAIQ RVTQWNLDFV EQSEQADRYQ ELANRVDEAL GFMSACGLGT DHPLMTTTDF
301: YTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMVWCGERTR QLDGAHVEFL RGIANPLGIK VSNKMDPFEL VKLVEILNPN NKPGRITVIV RMGAENMRVK
401: LPHLIRAVRR SGQIVTWVCD PMHGNTIKAP CGLKTRAFDS ILAEVRAFLD VHEQEGSHAG GIHLEMTGQN VTECIGGSRT VTYDDLSSRY HTHCDPRLNA
501: SQSLELAFIV AERLRKRRTG SQRVS

Arabidopsis Description

DHS1Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P29976]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.