Factsheet for VIT_00s1217g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33510.1	VIT_06s0004g02230.t01	AT1G51355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0591g00020.t01	Wine grape	plastid	29.76	99.34
Bra011449.1-P	Field mustard	cytosol	71.23	80.13
Solyc01g105420.2.1	Tomato	plastid	25.4	79.5
CDX68985	Canola	plastid	74.21	73.62
AT4G33510.1	Thale cress	plastid	74.01	73.57
CDX75362	Canola	plastid	73.41	72.83
VIT_00s0391g00070.t01	Wine grape	plastid	75.0	71.05
PGSC0003DMT400032681	Potato	plastid	73.21	69.89
VIT_18s0001g06250.t01	Wine grape	plastid	74.8	68.8

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:100251487	wikigene:100251487	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	ProteinID:ACY29656
ProteinID:ACY29656.2	EMBL:AM478424	InterPro:Aldolase_TIM	ProteinID:CAN79559	ProteinID:CAN79559.1	ProteinID:CCB61127
ProteinID:CCB61127.1	UniProt:D0VBC1	InterPro:DAHP_synth_2	EMBL:FN596576	GO:GO:0003674	GO:GO:0003824
GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	EMBL:GU060640
InterPro:IPR013785	EntrezGene:LOC100251487	wikigene:LOC100251487	RefSeq:NP_001268000.1	PFAM:PF01474	PANTHER:PTHR21337
PANTHER:PTHR21337:SF14	SUPFAM:SSF51569	TIGR:TC59396	TIGRFAMs:TIGR01358	UniParc:UPI00015CDC92	ArrayExpress:VIT_00s1217g00010
EnsemblPlantsGene:VIT_00s1217g00010	EnsemblPlants:VIT_00s1217g00010.t01	unigene:Vvi.11589	:	:	:

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:D0VBC1]

Coordinates

chrUn:+:37984234..37988088

Molecular Weight (calculated)

56126.3 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.358

Length

504 amino acids

Sequence
(BLAST)

001: MAVTGTANLA APTPPSLCRL FPNPRYLPTH TLKPRPISAS LSSIDIRSPN WTPGSWKSKK AQQLPEYPDP VELESVLKTL ESFPPMVFAG EARNLEERLA
101: DAAVGKAFLL QGGDCAESFK EFGGTNIRDT FRVLLQMGIV LTFGAQLPVI KVGRMAGQFA KPRSDPFEVK DGVKLPSYRG DNINSDDFDE KSRTPDPQRL
201: IRAYLQSVGT LNLLRAFATG GYAAMQRVSQ WNLDFVQHSE QGDRYTELAQ RVDEALGFMA AAGLTTDHPI MNTIEFWTSH ECLHLLYEQA LTRQDSTTGL
301: YYDCSAHMLW VGERTRQLDG AHVEFLRGIS NPLGIKVSDK MDPKELVKLC EILNPRNKPG RLTIITRMGA DNMRIKLPHL IRAVRQAGLI VTWVSDPMHG
401: NTIKAPCGLK TRSFDSIRSE LRAFFDVHDQ EGSHPGGVHL EMTGQNVTEC IGGSKTVTFD DLNSRYHTHC DPRLNASQSL ELAFAIAERL RRKRMRSVGA
501: LHKG

Best Arabidopsis Sequence Match ( AT4G33510.1 )
(BLAST)

001: MVTLNASSPL TTKSFLPYRH APRRPISFSP VFAVHSTDPK KSTQSASASV KWSLESWKSK KALQLPDYPD QKDVDSVLQT LSSFPPIVFA GEARKLEDKL
101: GQAAMGQAFM LQGGDCAESF KEFNANNIRD TFRVLLQMGV VLMFGGQLPV IKVGRMAGQF AKPRSDPFEE KDGVKLPSYR GDNINGDAFD EKSRIPDPHR
201: MVRAYTQSVA TLNLLRAFAT GGYAAMQRVS QWNLDFTQHS EQGDRYRELA NRVDEALGFM GAAGLTSAHP IMTTTEFWTS HECLLLPYEQ ALTREDSTSG
301: LYYDCSAHML WVGERTRQLD GAHVEFLRGI ANPLGIKVSD KMVPSELVKL IEILNPQNKP GRITVIVRMG AENMRVKLPN LIRAVRGAGQ IVTWVSDPMH
401: GNTIMAPGGL KTRSFDAIRA ELRAFFDVHD QEGSFPGGVH LEMTGQNVTE CVGGSRTITY NDLSSRYHTH CDPRLNASQS LELAFIIAER LRKRRLGSGN
501: LPSSIGV

Arabidopsis Description

DHS2Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178US70]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.