CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28940_001	Banana	cytosol, mitochondrion, plastid	60.0	78.99
Os10t0564400-01	Rice	plastid	70.71	68.9
EER91915	Sorghum	plastid	69.29	68.74
HORVU1Hr1G055370.1	Barley	plastid	70.91	68.42
TraesCS1D01G218300.1	Wheat	plastid	70.51	68.03
TraesCS1B01G229700.1	Wheat	plastid	70.1	67.64
HORVU0Hr1G000490.1	Barley	cytosol	68.48	64.57
KRH53034	Soybean	plastid	17.17	16.47
KRH16768	Soybean	endoplasmic reticulum, plastid	15.76	15.32
KRH72380	Soybean	endoplasmic reticulum	16.36	15.23
Bra016381.1-P	Field mustard	plastid	15.76	15.09
CDY41485	Canola	plastid	15.76	15.09
CDY04818	Canola	plastid	15.76	15.06
CDY68560	Canola	plastid	15.56	14.89
CDY21361	Canola	plastid	15.56	14.86
Bra031389.1-P	Field mustard	plastid	15.56	14.86
CDX88433	Canola	plastid	15.56	14.78
CDX87459	Canola	plastid	15.35	14.67
AT1G22410.1	Thale cress	plastid	15.56	14.61
Bra035024.1-P	Field mustard	cytosol	14.55	9.7
Zm00001d031139_P001	Maize	plastid	2.83	6.36

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:100789764	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	UniProt:A0A0R0G3L8	EMBL:ACUP02009148
InterPro:Aldolase_TIM	InterPro:DAHP_synth_2	EnsemblPlantsGene:GLYMA_15G054700	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	InterPro:IPR013785	EnsemblPlants:KRH10562	ProteinID:KRH10562	ProteinID:KRH10562.1
PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF16	MetaCyc:PWY-6164	SUPFAM:SSF51569	TIGRFAMs:TIGR01358
UniParc:UPI000189D95F	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:4297127..4301404

Molecular Weight (calculated)

54910.8 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.270

Length

495 amino acids

Sequence
(BLAST)

001: MAVASSSSLI TLKVKPCIFG SPRRSAVVRN CAKSTAGTIS TSWSLDSWRA KKALQLPEYP DANELDLVLQ TLSSFPPIVF AGEARNLEEK LAQAAMGNAF
101: LLQGGDCAES FKEFTANNIR DTFRVILQMG VVLMFGGQMP VIKVGRMAGQ FAKPRSDSFE EKNGVTLPSY RGDNVNGDAF DAASRIPDPQ RMIRAYCQSV
201: STLNLLRAFA TGGYAAMQRV NQWNLDFMEH SEQGDRYREL AHRVDEALGF MNVAGLTADH PIMSTTDFWT SHECLLLPYE QALTREDSTT GLHYDCSAHM
301: LWVGERTRQL DGAHVEFLRG VANPLGIKVS DKMVPDELVK LIDILNPKNK PGRITVIVRM GAENMRVKLP HLIRAVRRAG QIVTWVSDPM HGNTIKAPSG
401: LKTRSFDAIR AELRAFFDVH DQEGSYPGGV HLEMTGQNVT ECVGGSRTIT YDDLSSRYHT HCDPRLNASQ SLELAFNIAD RLRKRRLNST RSLGI

Best Arabidopsis Sequence Match ( AT4G33510.1 )
(BLAST)

001: MVTLNASSPL TTKSFLPYRH APRRPISFSP VFAVHSTDPK KSTQSASASV KWSLESWKSK KALQLPDYPD QKDVDSVLQT LSSFPPIVFA GEARKLEDKL
101: GQAAMGQAFM LQGGDCAESF KEFNANNIRD TFRVLLQMGV VLMFGGQLPV IKVGRMAGQF AKPRSDPFEE KDGVKLPSYR GDNINGDAFD EKSRIPDPHR
201: MVRAYTQSVA TLNLLRAFAT GGYAAMQRVS QWNLDFTQHS EQGDRYRELA NRVDEALGFM GAAGLTSAHP IMTTTEFWTS HECLLLPYEQ ALTREDSTSG
301: LYYDCSAHML WVGERTRQLD GAHVEFLRGI ANPLGIKVSD KMVPSELVKL IEILNPQNKP GRITVIVRMG AENMRVKLPN LIRAVRGAGQ IVTWVSDPMH
401: GNTIMAPGGL KTRSFDAIRA ELRAFFDVHD QEGSFPGGVH LEMTGQNVTE CVGGSRTITY NDLSSRYHTH CDPRLNASQS LELAFIIAER LRKRRLGSGN
501: LPSSIGV

Arabidopsis Description

DHS2Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178US70]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.