CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71646	Canola	endoplasmic reticulum	100.0	100.0
CDY19665	Canola	endoplasmic reticulum	100.0	100.0
CDY54623	Canola	endoplasmic reticulum	100.0	100.0
CDY45490	Canola	plasma membrane	73.1	97.28
ATCG01000.1	Thale cress	endoplasmic reticulum	97.37	97.08
HORVU5Hr1G032230.1	Barley	endoplasmic reticulum, extracellular, golgi	12.28	93.33
HORVU5Hr1G032220.1	Barley	endoplasmic reticulum	27.49	93.07
ATMG00370.1	Thale cress	plasma membrane	50.88	87.44
AT2G07739.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	50.58	86.93
KRH75850	Soybean	extracellular	20.18	82.14
Solyc11g039900.1.1	Tomato	endoplasmic reticulum, extracellular	23.68	75.0
Solyc02g078310.1.1	Tomato	extracellular	9.94	65.38
CDX95223	Canola	endoplasmic reticulum, extracellular, plasma membrane	100.0	30.05
CDY19657	Canola	endoplasmic reticulum, extracellular, plasma membrane	100.0	30.05
ATCG01130.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	97.37	18.64

Protein Annotations

MapMan:35.1	GO:A0A078JEE6	UniProt:A0A078JEE6	ProteinID:ASY95061.1	ProteinID:CDY19665.1	ProteinID:CDY54623.1
EnsemblPlants:CDY63593	ProteinID:CDY63593	ProteinID:CDY63593.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009528	GO:GO:0009536
GO:GO:0009706	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00039444001	PFAM:PF05758
PANTHER:PTHR33163	PANTHER:PTHR33163:SF13	InterPro:TIC214	TMHMM:TMhelix	UniParc:UPI0004EEADE7	SEG:seg

Description

BnaUnng00810DBnaC09g29210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEE6]

Coordinates

chrLK034324:-:3404..4432

Molecular Weight (calculated)

39855.6 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.010

Length

342 amino acids

Sequence
(BLAST)

001: MVFQSFILGN LVSLCMKIIN SVVVVGLYYG FLTTFSIGPS YLFLLRARVM DEGEEGTEKK VSATTGFIAG QLMMFISIYY APLHLALGRP HTITVLALPY
101: LLFHFFWNNH KHFFDYGSTT RNEMRNLRIQ CVFLNNFIFQ LFNHFILPSS MLARLVNIYM FRCNNKMLFV TSSFVGWLIG HILFMKWVGL VLVWIQQNNS
201: IRSNVLIRSN KYKFLVSELR NSMTRIFSII LFITCVYYLG RIPSPIFTKK LKGTSETGGT KQDQEVSTEE APFPSLFSEE REDLDKIDEM EEIGVNGKDK
301: INKDDEFHVR TYYNYKTVSE NRDGNKENSN LEFFKIKKKE DR

Best Arabidopsis Sequence Match ( AT2G07565.1 )
(BLAST)

001: MKIINLVVVV GLYCGFMTTF YIGPSYLFLL RARVMDEGEE GTEKKVSART CFITGQLMMF ISIYYAPMHL ALCRPYTITV LALPYLLFHL LWNNHKHFFY
101: YGSTTRNKMC NLRIQCFRWL VNWSHFIPAK VIRSNKYKFF VSELRNSMAR IFSRIPSPIF TKKLKGTSER GVTKQEQEVS IEETPFPSIF LKEGEDLDKI
201: DKMKEILVNG KDKINKDDEL HVRTYYNYKT VSENQYGNKE NSNLDFFKKT KKDH

Arabidopsis Description

Ycf1 domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0A1]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.