Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 4
- extracellular 4
- vacuole 3
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71646 | Canola | endoplasmic reticulum | 97.08 | 97.37 |
| CDY19665 | Canola | endoplasmic reticulum | 97.08 | 97.37 |
| CDY54623 | Canola | endoplasmic reticulum | 97.08 | 97.37 |
| CDY63593 | Canola | endoplasmic reticulum | 97.08 | 97.37 |
| CDY45490 | Canola | plasma membrane | 72.89 | 97.28 |
| HORVU5Hr1G032220.1 | Barley | endoplasmic reticulum | 27.7 | 94.06 |
| HORVU5Hr1G032230.1 | Barley | endoplasmic reticulum, extracellular, golgi | 12.24 | 93.33 |
| ATMG00370.1 | Thale cress | plasma membrane | 51.02 | 87.94 |
| AT2G07739.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 50.73 | 87.44 |
| KRH75850 | Soybean | extracellular | 20.12 | 82.14 |
| AT2G07565.1 | Thale cress | extracellular, plasma membrane, vacuole | 53.94 | 72.83 |
| CDX95223 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 97.08 | 29.26 |
| CDY19657 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 97.08 | 29.26 |
| ATCG01130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 100.0 | 19.2 |
Protein Annotations
| ArrayExpress:ATCG01000 | EnsemblPlants:ATCG01000.1 | EnsemblPlantsGene:ATCG01000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TIC214 | PANTHER:PTHR33163 | PANTHER:PTHR33163:SF13 | PFAM:PF05758 | RefSeq:ATCG01000 | RefSeq:ATCG01000-TAIR-G |
| SEG:seg | Symbol:YCF1.1 | TAIR:ATCG01000 | TAIR:ATCG01000.1 | TMHMM:TMhelix | UniParc:UPI00005EDEAF |
| MapMan:35.1 | : | : | : | : | : |
Description
YCF1.1Ycf1 protein [Source:TAIR;Acc:ATCG01000]
Coordinates
chrPt:+:109405..110436
Molecular Weight (calculated)
39862.7 Da
IEP (calculated)
9.145
GRAVY (calculated)
0.046
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: VMVFQSFILG NLVSLCMKII NSVVVVGLYY GFLTTFSIGP SYLFLLRARV MDEGEEGTEK KVSATTGFIA GQLMMFISIY YAPLHLALGR PHTITVLALP
101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDH
101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.