Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc11g039900.1.1 | Tomato | endoplasmic reticulum, extracellular | 27.17 | 63.89 |
HORVU5Hr1G032230.1 | Barley | endoplasmic reticulum, extracellular, golgi | 10.24 | 57.78 |
HORVU5Hr1G032220.1 | Barley | endoplasmic reticulum | 22.83 | 57.43 |
ATCG01000.1 | Thale cress | endoplasmic reticulum | 72.83 | 53.94 |
ATMG00370.1 | Thale cress | plasma membrane | 42.13 | 53.77 |
AT2G07739.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 41.73 | 53.27 |
Solyc02g078310.1.1 | Tomato | extracellular | 10.63 | 51.92 |
ATCG01130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 72.83 | 10.36 |
Protein Annotations
ArrayExpress:AT2G07565 | EnsemblPlants:AT2G07565.1 | EnsemblPlantsGene:AT2G07565 | EntrezGene:28717802 | GO:GO:0005575 | GO:GO:0016020 |
GO:GO:0016021 | InterPro:TIC214 | PANTHER:PTHR33163 | PANTHER:PTHR33163:SF13 | PFAM:PF05758 | ProteinID:ANM62338.1 |
RefSeq:NP_001324502.1 | TMHMM:TMhelix | UniParc:UPI000848B575 | UniProt:A0A1P8B0A1 | MapMan:35.1 | : |
Description
Ycf1 domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0A1]
Coordinates
chr2:+:3187068..3188422
Molecular Weight (calculated)
29963.6 Da
IEP (calculated)
9.826
GRAVY (calculated)
-0.296
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIINLVVVV GLYCGFMTTF YIGPSYLFLL RARVMDEGEE GTEKKVSART CFITGQLMMF ISIYYAPMHL ALCRPYTITV LALPYLLFHL LWNNHKHFFY
101: YGSTTRNKMC NLRIQCFRWL VNWSHFIPAK VIRSNKYKFF VSELRNSMAR IFSRIPSPIF TKKLKGTSER GVTKQEQEVS IEETPFPSIF LKEGEDLDKI
201: DKMKEILVNG KDKINKDDEL HVRTYYNYKT VSENQYGNKE NSNLDFFKKT KKDH
101: YGSTTRNKMC NLRIQCFRWL VNWSHFIPAK VIRSNKYKFF VSELRNSMAR IFSRIPSPIF TKKLKGTSER GVTKQEQEVS IEETPFPSIF LKEGEDLDKI
201: DKMKEILVNG KDKINKDDEL HVRTYYNYKT VSENQYGNKE NSNLDFFKKT KKDH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.