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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • plastid 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g039900.1.1 Tomato endoplasmic reticulum, extracellular 27.17 63.89
HORVU5Hr1G032230.1 Barley endoplasmic reticulum, extracellular, golgi 10.24 57.78
HORVU5Hr1G032220.1 Barley endoplasmic reticulum 22.83 57.43
ATCG01000.1 Thale cress endoplasmic reticulum 72.83 53.94
ATMG00370.1 Thale cress plasma membrane 42.13 53.77
AT2G07739.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 41.73 53.27
Solyc02g078310.1.1 Tomato extracellular 10.63 51.92
ATCG01130.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 72.83 10.36
Protein Annotations
ArrayExpress:AT2G07565EnsemblPlants:AT2G07565.1EnsemblPlantsGene:AT2G07565EntrezGene:28717802GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:TIC214PANTHER:PTHR33163PANTHER:PTHR33163:SF13PFAM:PF05758ProteinID:ANM62338.1
RefSeq:NP_001324502.1TMHMM:TMhelixUniParc:UPI000848B575UniProt:A0A1P8B0A1MapMan:35.1:
Description
Ycf1 domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0A1]
Coordinates
chr2:+:3187068..3188422
Molecular Weight (calculated)
29963.6 Da
IEP (calculated)
9.826
GRAVY (calculated)
-0.296
Length
254 amino acids
Sequence
(BLAST)
001: MKIINLVVVV GLYCGFMTTF YIGPSYLFLL RARVMDEGEE GTEKKVSART CFITGQLMMF ISIYYAPMHL ALCRPYTITV LALPYLLFHL LWNNHKHFFY
101: YGSTTRNKMC NLRIQCFRWL VNWSHFIPAK VIRSNKYKFF VSELRNSMAR IFSRIPSPIF TKKLKGTSER GVTKQEQEVS IEETPFPSIF LKEGEDLDKI
201: DKMKEILVNG KDKINKDDEL HVRTYYNYKT VSENQYGNKE NSNLDFFKKT KKDH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.