Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G032220.1 | Barley | endoplasmic reticulum | 67.31 | 34.65 |
| Solyc11g039900.1.1 | Tomato | endoplasmic reticulum, extracellular | 71.15 | 34.26 |
| KRH75850 | Soybean | extracellular | 38.46 | 23.81 |
| Solyc11g044670.1.1 | Tomato | plasma membrane | 63.46 | 16.58 |
| CDY45490 | Canola | plasma membrane | 65.38 | 13.23 |
| Solyc10g062330.1.1 | Tomato | plasma membrane | 65.38 | 11.3 |
| AT2G07565.1 | Thale cress | extracellular, plasma membrane, vacuole | 51.92 | 10.63 |
| CDX71646 | Canola | endoplasmic reticulum | 65.38 | 9.94 |
| CDY19665 | Canola | endoplasmic reticulum | 65.38 | 9.94 |
| CDY54623 | Canola | endoplasmic reticulum | 65.38 | 9.94 |
| CDY63593 | Canola | endoplasmic reticulum | 65.38 | 9.94 |
| Solyc11g021310.1.1 | Tomato | nucleus, plastid | 63.46 | 8.4 |
| Solyc04g045540.1.1 | Tomato | plasma membrane | 46.15 | 8.25 |
| Solyc12g036540.1.1 | Tomato | extracellular | 7.69 | 8.0 |
| Solyc02g011870.1.1 | Tomato | extracellular | 15.38 | 7.92 |
| Solyc01g017480.1.1 | Tomato | extracellular, plasma membrane, plastid | 17.31 | 7.09 |
| Solyc05g047440.1.1 | Tomato | extracellular | 9.62 | 5.75 |
| CDY19657 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.38 | 2.99 |
| CDX95223 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.38 | 2.99 |
| Solyc01g017240.1.1 | Tomato | plasma membrane | 5.77 | 2.54 |
| Solyc11g021180.1.1 | Tomato | extracellular | 0.0 | 0.0 |
| HORVU5Hr1G032230.1 | Barley | endoplasmic reticulum, extracellular, golgi | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc02g078310.1.1 | EnsemblPlantsGene:Solyc02g078310.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TIC214 |
| PFAM:PF05758 | TMHMM:TMhelix | UniParc:UPI00027680DC | UniProt:K4B955 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2:-:43049261..43049419
Molecular Weight (calculated)
6469.1 Da
IEP (calculated)
9.427
GRAVY (calculated)
0.800
Length
52 amino acids
Sequence
(BLAST)
(BLAST)
1: MFIPIYYALL YLVLGRPHTI IVLALSYFLF LFFWNNHKDF LLSWIYYQKF NT
001: VMVFQSFILG NLVSLCMKII NSVVVVGLYY GFLTTFSIGP SYLFLLRARV MDEGEEGTEK KVSATTGFIA GQLMMFISIY YAPLHLALGR PHTITVLALP
101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDH
101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDH
Arabidopsis Description
YCF1.1Ycf1 protein [Source:TAIR;Acc:ATCG01000]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.