Factsheet for Solyc11g021310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G032220.1	Barley	endoplasmic reticulum	24.43	95.05
HORVU5Hr1G032230.1	Barley	endoplasmic reticulum, extracellular, golgi	10.43	91.11
Solyc11g021180.1.1	Tomato	extracellular	15.52	91.04
Solyc11g044670.1.1	Tomato	plasma membrane	45.29	89.45
Solyc01g017240.1.1	Tomato	plasma membrane	26.21	87.29
Solyc02g011870.1.1	Tomato	extracellular	22.14	86.14
Solyc05g047440.1.1	Tomato	extracellular	18.58	83.91
Solyc10g062330.1.1	Tomato	plasma membrane	62.85	82.06
Solyc04g045540.1.1	Tomato	plasma membrane	58.02	78.35
Solyc11g039900.1.1	Tomato	endoplasmic reticulum, extracellular	19.85	72.22
Solyc12g036540.1.1	Tomato	extracellular	9.16	72.0
Solyc02g078310.1.1	Tomato	extracellular	8.4	63.46
KRH66155	Soybean	endoplasmic reticulum, extracellular	18.58	58.87
Solyc01g017480.1.1	Tomato	extracellular, plasma membrane, plastid	18.07	55.91
PGSC0003DMT400027612	Potato	extracellular, plasma membrane	11.2	48.89
KRH72061	Soybean	cytosol	11.45	42.45
VIT_09s0054g00520.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	75.57	29.44

Protein Annotations

MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009528	GO:GO:0009536	GO:GO:0009706	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	UniProt:K4D780	PFAM:PF05758	PANTHER:PTHR33163	PANTHER:PTHR33163:SF13
EnsemblPlantsGene:Solyc11g021310.1	EnsemblPlants:Solyc11g021310.1.1	InterPro:TIC214	TMHMM:TMhelix	UniParc:UPI000276967E	SEG:seg

Description

No Description!

Coordinates

chr11:-:13398603..13399852

Molecular Weight (calculated)

46205.2 Da

IEP (calculated)

8.997

GRAVY (calculated)

-0.048

Length

393 amino acids

Sequence
(BLAST)

001: MIFQSFLLGN LVSLCMKIIN SVVVVGLYYG FLTTFSIGPS YFFLLRALVM EEGTEKKVSK PTGFITGQLM MFISIYYAPL HLALVRSHTI TVLALPYLLF
101: HFFWNNHKHF FDYGSTTRNS MRNLSIQCVF LNNLIFQLFN HFILPSSMLA RLVNIYLFRC NNKILFVISG FVGWLIGHIL FMKWLGLVLV LIRQNHSIRS
201: NKYIQSNKYL VLELRNSMAR IFSILLFITC VYYLGRIPSP ILTKKLKEMK RTKQEQEGST EEDPYPSPSI FSEEGWDTDK IDETEEIRVN GKDKIKDKFN
301: SHLTETGYNN INTSNSPIYD YQDSYLSNNN TENLENCKLQ LLDKKNENQE QDLFWFQKPL VSLLFDYNRW NRPFCYIKNN RFEQIDFFPI LSN

Best Arabidopsis Sequence Match ( ATCG01130.1 )
(BLAST)

0001: VMVFQSFILG NLVSLCMKII NSVVVVGLYY GFLTTFSIGP SYLFLLRARV MDEGEEGTEK KVSATTGFIA GQLMMFISIY YAPLHLALGR PHTITVLALP
0101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
0201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
0301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDHFLWFEKP FVTLVFDYKR WNRPNRYIKN DKIENIVRNE MSQYFFYTCQ SDGKERISFT
0401: YPPNLSTFFE MIQKRIPSFT KEKKTFDQVS TYWSLIHEEK RENLKKEFLN RIEALDKEWS VENILEKTTR FCYNEAKKEY LPKIYDPFLH GISRGRIKKL
0501: PPFQIITETY RKNNLGGSWI NKIHGLLLKI NYKKFEQTIE KFNRKSLSIE KKLSFFSEPQ QEEKINSEEE IKTFKFLFDI VRTDSNDQTL IKNFMDFPEI
0601: NKKVPRWSYK LISELEELEG ENEENVPMEP GIRSRKAKRV VVFTDKEPHG EIYTNLKDNQ NSDQNDEMAL IRYSQQSDFR REIIKGSMRS QRRKTVIWEF
0701: FQAKVHSPLF FDRIDKLFFF SFDIWGLKKK IIKNFIWKKK IDKKEEEQSK REETRRIEIA ETWDSFLFAQ IIRGSLLVTQ SILRKYIILP LLIIIKNSVR
0801: MLLFQFPEWS QDLKDWKREM HVKCTYNGVQ LSETEFPRNW LTDGIQIKIL FPFYLKPWHK SKFQASQKAR LKKTKDKGEK NDFCFLTVWG METELPFGSA
0901: QRKPSFFEPI SKELKKRIKK LKKKSFVVLK IFKERAPIFL KVAKETKNWI LKNFIFIKGI SKRNLIPLFG PREIYELNEP KKDSIISNQM IHELSVQNKS
1001: LEWTNSSLSE KKIKNLIDRK KTIRNQIEEI SKEKQNLTNS CTKLRYDSKI IESSKKIWQT FKRKNTRLIR KSIFFFKFCI EQMSIAIFLG IINIPRITTQ
1101: LFFESTKKIL DKYIYKNEEN GEKKKNTLYF ISTIKNLISN KKKMSYDLCS LSQAYVFYKL SQIKVSNFCK LKAVLEYNIC ITSFFVKNKI KVFFQEHGIF
1201: HYELKNKTFL NSEVNQWKNW LRSQYQYNLP QISWARLVTQ NWKNKINKDS LVLNPSLTKE DSYEKKKFDN YKKQKFFEAD SLLNPKHNVK KDSIYNLFCY
1301: KSIHSTEKNF DMSIGIALDN CLVSSFLEKY NIRGMGEIRH RKYLDWRILN FWFTKKVTIE PWVDTKSKKK YINTKVQNYQ KIDKITQTDL ANKKRNFFDW
1401: MGMNEEILNQ RITNFEFFFF PEFFLFSSTY KMKPWVIPIK LLLLNFNENI NVNKKIIRKK KGFIPSNEKE SLRFYNLNKE EKESAGQVEL ESDKETKRNP
1501: EAARLNQEKN IEENFAESTI KKRKNKKQYK SNTEAELDLF LTRYSRFQLR WNCFFNQKIL NNVKVYCLLV RLNNPNEIAV SSIERGEMSL DILMIEKNFT
1601: FAKLMKKGIL IIEPVRLSVQ NDGQLIIYRT IGISLVHKNK HKISKRYKKK SYINKKFFEK SITKYQNKTV NKKKNNYDFF VPEKILSPKR RREFRILICF
1701: NLKKKNARDT NSRFDKNIQN LTTVLHKKKD LDLDKDKNNL INLKSFLWPN FKLEDLACMN RYWFNTTNGN HFSMIRIRMY TRFPIP

Arabidopsis Description

YCF1.2Ycf1 protein [Source:TAIR;Acc:ATCG01130]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.