Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75850 | Soybean | extracellular | 55.56 | 71.43 |
| Solyc02g078310.1.1 | Tomato | extracellular | 34.26 | 71.15 |
| Solyc11g021180.1.1 | Tomato | extracellular | 37.96 | 61.19 |
| Solyc05g047440.1.1 | Tomato | extracellular | 46.3 | 57.47 |
| HORVU5Hr1G032230.1 | Barley | endoplasmic reticulum, extracellular, golgi | 23.15 | 55.56 |
| Solyc11g044670.1.1 | Tomato | plasma membrane | 71.3 | 38.69 |
| HORVU5Hr1G032220.1 | Barley | endoplasmic reticulum | 36.11 | 38.61 |
| CDY45490 | Canola | plasma membrane | 75.0 | 31.52 |
| Solyc02g011870.1.1 | Tomato | extracellular | 26.85 | 28.71 |
| AT2G07565.1 | Thale cress | extracellular, plasma membrane, vacuole | 63.89 | 27.17 |
| Solyc10g062330.1.1 | Tomato | plasma membrane | 74.07 | 26.58 |
| CDY54623 | Canola | endoplasmic reticulum | 75.0 | 23.68 |
| CDY63593 | Canola | endoplasmic reticulum | 75.0 | 23.68 |
| CDY19665 | Canola | endoplasmic reticulum | 75.0 | 23.68 |
| CDX71646 | Canola | endoplasmic reticulum | 75.0 | 23.68 |
| Solyc04g045540.1.1 | Tomato | plasma membrane | 56.48 | 20.96 |
| Solyc11g021310.1.1 | Tomato | nucleus, plastid | 72.22 | 19.85 |
| Solyc01g017480.1.1 | Tomato | extracellular, plasma membrane, plastid | 9.26 | 7.87 |
| CDY19657 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.0 | 7.12 |
| CDX95223 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.0 | 7.12 |
| Solyc12g036540.1.1 | Tomato | extracellular | 2.78 | 6.0 |
| Solyc01g017240.1.1 | Tomato | plasma membrane | 1.85 | 1.69 |
Protein Annotations
| EnsemblPlants:Solyc11g039900.1.1 | EnsemblPlantsGene:Solyc11g039900.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TIC214 |
| PANTHER:PTHR33163 | PANTHER:PTHR33163:SF13 | PFAM:PF05758 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002769E0B |
| UniProt:K4D7W6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:41168740..41169066
Molecular Weight (calculated)
12757.9 Da
IEP (calculated)
9.228
GRAVY (calculated)
0.512
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MHEIINSVIV VGLYYGFLTT FSIGTSYLFL IRAPVMEEGT ENKVSATTGF IKGQLMMFIS IYYALLHLAL GRTHTRIVLP LPYLLFYFFW NNHKELFLLW
101: IYYQKFKE
101: IYYQKFKE
001: MKIINLVVVV GLYCGFMTTF YIGPSYLFLL RARVMDEGEE GTEKKVSART CFITGQLMMF ISIYYAPMHL ALCRPYTITV LALPYLLFHL LWNNHKHFFY
101: YGSTTRNKMC NLRIQCFRWL VNWSHFIPAK VIRSNKYKFF VSELRNSMAR IFSRIPSPIF TKKLKGTSER GVTKQEQEVS IEETPFPSIF LKEGEDLDKI
201: DKMKEILVNG KDKINKDDEL HVRTYYNYKT VSENQYGNKE NSNLDFFKKT KKDH
101: YGSTTRNKMC NLRIQCFRWL VNWSHFIPAK VIRSNKYKFF VSELRNSMAR IFSRIPSPIF TKKLKGTSER GVTKQEQEVS IEETPFPSIF LKEGEDLDKI
201: DKMKEILVNG KDKINKDDEL HVRTYYNYKT VSENQYGNKE NSNLDFFKKT KKDH
Arabidopsis Description
Ycf1 domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0A1]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.