Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G032230.1 | Barley | endoplasmic reticulum, extracellular, golgi | 31.11 | 62.22 |
| Solyc11g021180.1.1 | Tomato | extracellular | 33.33 | 44.78 |
| Solyc02g011870.1.1 | Tomato | extracellular | 41.11 | 36.63 |
| Solyc05g047440.1.1 | Tomato | extracellular | 34.44 | 35.63 |
| KRH72061 | Soybean | cytosol | 33.33 | 28.3 |
| Solyc11g044670.1.1 | Tomato | plasma membrane | 44.44 | 20.1 |
| Solyc04g045540.1.1 | Tomato | plasma membrane | 50.0 | 15.46 |
| Solyc10g062330.1.1 | Tomato | plasma membrane | 51.11 | 15.28 |
| Solyc01g017480.1.1 | Tomato | extracellular, plasma membrane, plastid | 16.67 | 11.81 |
| Solyc11g021310.1.1 | Tomato | nucleus, plastid | 48.89 | 11.2 |
| HORVU5Hr1G032220.1 | Barley | endoplasmic reticulum | 12.22 | 10.89 |
| Solyc01g017240.1.1 | Tomato | plasma membrane | 11.11 | 8.47 |
| GSMUA_Achr6P22060_001 | Banana | extracellular, vacuole | 4.44 | 7.41 |
| VIT_09s0054g00520.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 52.22 | 4.66 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400027612 | EnsemblPlantsGene:PGSC0003DMG400010649 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TIC214 |
| PFAM:PF05758 | PGSC:PGSC0003DMG400010649 | TMHMM:TMhelix | UniParc:UPI000295519C | UniProt:M1APX7 | MapMan:35.2 |
Description
RF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400010649]
Coordinates
chr4:-:12154997..12156006
Molecular Weight (calculated)
10321.8 Da
IEP (calculated)
5.489
GRAVY (calculated)
0.801
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MCITNSVVVV GLYYGFLTTF SIGPSYLFLL RALVMEEGIS NNWFFYGTAH DVHIDLLCAL PLQVMIIANF RQGEKIVPLF IFQSFINYQF
0001: VMVFQSFILG NLVSLCMKII NSVVVVGLYY GFLTTFSIGP SYLFLLRARV MDEGEEGTEK KVSATTGFIA GQLMMFISIY YAPLHLALGR PHTITVLALP
0101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
0201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
0301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDHFLWFEKP FVTLVFDYKR WNRPNRYIKN DKIENIVRNE MSQYFFYTCQ SDGKERISFT
0401: YPPNLSTFFE MIQKRIPSFT KEKKTFDQVS TYWSLIHEEK RENLKKEFLN RIEALDKEWS VENILEKTTR FCYNEAKKEY LPKIYDPFLH GISRGRIKKL
0501: PPFQIITETY RKNNLGGSWI NKIHGLLLKI NYKKFEQTIE KFNRKSLSIE KKLSFFSEPQ QEEKINSEEE IKTFKFLFDI VRTDSNDQTL IKNFMDFPEI
0601: NKKVPRWSYK LISELEELEG ENEENVPMEP GIRSRKAKRV VVFTDKEPHG EIYTNLKDNQ NSDQNDEMAL IRYSQQSDFR REIIKGSMRS QRRKTVIWEF
0701: FQAKVHSPLF FDRIDKLFFF SFDIWGLKKK IIKNFIWKKK IDKKEEEQSK REETRRIEIA ETWDSFLFAQ IIRGSLLVTQ SILRKYIILP LLIIIKNSVR
0801: MLLFQFPEWS QDLKDWKREM HVKCTYNGVQ LSETEFPRNW LTDGIQIKIL FPFYLKPWHK SKFQASQKAR LKKTKDKGEK NDFCFLTVWG METELPFGSA
0901: QRKPSFFEPI SKELKKRIKK LKKKSFVVLK IFKERAPIFL KVAKETKNWI LKNFIFIKGI SKRNLIPLFG PREIYELNEP KKDSIISNQM IHELSVQNKS
1001: LEWTNSSLSE KKIKNLIDRK KTIRNQIEEI SKEKQNLTNS CTKLRYDSKI IESSKKIWQT FKRKNTRLIR KSIFFFKFCI EQMSIAIFLG IINIPRITTQ
1101: LFFESTKKIL DKYIYKNEEN GEKKKNTLYF ISTIKNLISN KKKMSYDLCS LSQAYVFYKL SQIKVSNFCK LKAVLEYNIC ITSFFVKNKI KVFFQEHGIF
1201: HYELKNKTFL NSEVNQWKNW LRSQYQYNLP QISWARLVTQ NWKNKINKDS LVLNPSLTKE DSYEKKKFDN YKKQKFFEAD SLLNPKHNVK KDSIYNLFCY
1301: KSIHSTEKNF DMSIGIALDN CLVSSFLEKY NIRGMGEIRH RKYLDWRILN FWFTKKVTIE PWVDTKSKKK YINTKVQNYQ KIDKITQTDL ANKKRNFFDW
1401: MGMNEEILNQ RITNFEFFFF PEFFLFSSTY KMKPWVIPIK LLLLNFNENI NVNKKIIRKK KGFIPSNEKE SLRFYNLNKE EKESAGQVEL ESDKETKRNP
1501: EAARLNQEKN IEENFAESTI KKRKNKKQYK SNTEAELDLF LTRYSRFQLR WNCFFNQKIL NNVKVYCLLV RLNNPNEIAV SSIERGEMSL DILMIEKNFT
1601: FAKLMKKGIL IIEPVRLSVQ NDGQLIIYRT IGISLVHKNK HKISKRYKKK SYINKKFFEK SITKYQNKTV NKKKNNYDFF VPEKILSPKR RREFRILICF
1701: NLKKKNARDT NSRFDKNIQN LTTVLHKKKD LDLDKDKNNL INLKSFLWPN FKLEDLACMN RYWFNTTNGN HFSMIRIRMY TRFPIP
0101: YLLFHFFWNN HKHFFDYGST TRNEMRNLRI QCVFLNNLIF QLFNHFILPS SMLARLVNIY MFRCNNKMLF VTSSFVGWLI GHILFMKWVG LVLVWIQQNN
0201: SIRSNVVIRS NKYKFLVSEL RNSMARIFSI LLFITCVYYL GRIPSPIFTK KLKGTSETGG TKQDQEVSTE EAPFPSLFSE EGEDLDKIDE MEEIRVNGKD
0301: KINKDDEFHV RTYYNYKTVS ENLYGNKENS NLEFFKIKKK EDHFLWFEKP FVTLVFDYKR WNRPNRYIKN DKIENIVRNE MSQYFFYTCQ SDGKERISFT
0401: YPPNLSTFFE MIQKRIPSFT KEKKTFDQVS TYWSLIHEEK RENLKKEFLN RIEALDKEWS VENILEKTTR FCYNEAKKEY LPKIYDPFLH GISRGRIKKL
0501: PPFQIITETY RKNNLGGSWI NKIHGLLLKI NYKKFEQTIE KFNRKSLSIE KKLSFFSEPQ QEEKINSEEE IKTFKFLFDI VRTDSNDQTL IKNFMDFPEI
0601: NKKVPRWSYK LISELEELEG ENEENVPMEP GIRSRKAKRV VVFTDKEPHG EIYTNLKDNQ NSDQNDEMAL IRYSQQSDFR REIIKGSMRS QRRKTVIWEF
0701: FQAKVHSPLF FDRIDKLFFF SFDIWGLKKK IIKNFIWKKK IDKKEEEQSK REETRRIEIA ETWDSFLFAQ IIRGSLLVTQ SILRKYIILP LLIIIKNSVR
0801: MLLFQFPEWS QDLKDWKREM HVKCTYNGVQ LSETEFPRNW LTDGIQIKIL FPFYLKPWHK SKFQASQKAR LKKTKDKGEK NDFCFLTVWG METELPFGSA
0901: QRKPSFFEPI SKELKKRIKK LKKKSFVVLK IFKERAPIFL KVAKETKNWI LKNFIFIKGI SKRNLIPLFG PREIYELNEP KKDSIISNQM IHELSVQNKS
1001: LEWTNSSLSE KKIKNLIDRK KTIRNQIEEI SKEKQNLTNS CTKLRYDSKI IESSKKIWQT FKRKNTRLIR KSIFFFKFCI EQMSIAIFLG IINIPRITTQ
1101: LFFESTKKIL DKYIYKNEEN GEKKKNTLYF ISTIKNLISN KKKMSYDLCS LSQAYVFYKL SQIKVSNFCK LKAVLEYNIC ITSFFVKNKI KVFFQEHGIF
1201: HYELKNKTFL NSEVNQWKNW LRSQYQYNLP QISWARLVTQ NWKNKINKDS LVLNPSLTKE DSYEKKKFDN YKKQKFFEAD SLLNPKHNVK KDSIYNLFCY
1301: KSIHSTEKNF DMSIGIALDN CLVSSFLEKY NIRGMGEIRH RKYLDWRILN FWFTKKVTIE PWVDTKSKKK YINTKVQNYQ KIDKITQTDL ANKKRNFFDW
1401: MGMNEEILNQ RITNFEFFFF PEFFLFSSTY KMKPWVIPIK LLLLNFNENI NVNKKIIRKK KGFIPSNEKE SLRFYNLNKE EKESAGQVEL ESDKETKRNP
1501: EAARLNQEKN IEENFAESTI KKRKNKKQYK SNTEAELDLF LTRYSRFQLR WNCFFNQKIL NNVKVYCLLV RLNNPNEIAV SSIERGEMSL DILMIEKNFT
1601: FAKLMKKGIL IIEPVRLSVQ NDGQLIIYRT IGISLVHKNK HKISKRYKKK SYINKKFFEK SITKYQNKTV NKKKNNYDFF VPEKILSPKR RREFRILICF
1701: NLKKKNARDT NSRFDKNIQN LTTVLHKKKD LDLDKDKNNL INLKSFLWPN FKLEDLACMN RYWFNTTNGN HFSMIRIRMY TRFPIP
Arabidopsis Description
YCF1.2Ycf1 protein [Source:TAIR;Acc:ATCG01130]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.